CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008430.1-P	Field mustard	plastid	96.69	96.69
CDX67975	Canola	plastid	86.75	80.86
CDX79343	Canola	plastid	86.09	80.25
CDX87353	Canola	plastid	84.77	79.01
CDX88567	Canola	plastid	84.11	78.4
AT1G80920.1	Thale cress	plastid	84.11	77.91
PGSC0003DMT400036852	Potato	plastid	54.97	51.23
Solyc03g117590.2.1	Tomato	plastid	54.3	50.93
KRH47322	Soybean	plastid	51.66	50.0
GSMUA_Achr1P10150_001	Banana	mitochondrion	43.71	48.18
PGSC0003DMT400073306	Potato	cytosol	51.66	48.15
KRH44579	Soybean	plastid	44.37	47.18
Solyc06g068500.2.1	Tomato	plastid	50.33	46.91
VIT_09s0018g00620.t01	Wine grape	plastid	47.02	46.71
GSMUA_AchrUn_...	Banana	plastid	47.02	42.26
GSMUA_Achr7P05310_001	Banana	mitochondrion	41.06	40.79
TraesCS7B01G415000.1	Wheat	plastid	29.14	31.21
EES05389	Sorghum	plastid	30.46	30.07
TraesCS7D01G495200.1	Wheat	plastid	29.8	29.41
TraesCSU01G098500.1	Wheat	plastid	29.14	29.14
Os06t0650900-02	Rice	plastid	26.49	28.17
TraesCS7D01G494800.1	Wheat	plastid	24.5	28.03
TraesCS7B01G413400.1	Wheat	mitochondrion, plastid	25.83	27.66
TraesCS7D01G494000.1	Wheat	plastid	28.48	27.39
Zm00001d046812_P001	Maize	plastid	27.81	27.27
Zm00001d046813_P003	Maize	plastid	27.81	27.27
TraesCS7D01G494900.1	Wheat	plastid	26.49	27.21
TraesCS7A01G506000.1	Wheat	plastid	27.81	26.75
TraesCS7D01G494100.1	Wheat	plastid	17.22	26.26
EER90130	Sorghum	plastid	29.14	25.88
TraesCS7B01G413500.1	Wheat	mitochondrion, plastid	17.22	25.74
HORVU7Hr1G113530.1	Barley	plastid	26.49	25.16
HORVU7Hr1G113460.1	Barley	plastid	26.49	25.16
TraesCS7A01G506100.1	Wheat	plastid	23.18	22.73
TraesCS7A01G506700.1	Wheat	plastid	25.17	22.09
CDX96373	Canola	nucleus	27.15	20.4
CDY70323	Canola	cytosol	27.15	17.83
TraesCS7D01G495500.1	Wheat	plastid	29.8	15.68
TraesCS7B01G414800.1	Wheat	nucleus	27.15	13.85

Protein Annotations

EnsemblPlants:CDY22291	EnsemblPlantsGene:GSBRNA2T00018756001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR24074	PANTHER:PTHR24074:SF12	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
ProteinID:CDY22291	ProteinID:CDY22291.1	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EEED81
UniProt:A0A078GA70	MapMan:23.1.2.5	:	:	:	:

Description

BnaC02g25950DBnaC02g25950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GA70]

Coordinates

chrLK032129:+:608016..609017

Molecular Weight (calculated)

17156.1 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.732

Length

151 amino acids

Sequence
(BLAST)

001: MTIALTIGGN VFSGLSGSKS SRRKNAKMLN RTRVVCSSSS VMDPYKTLKI RPDSSEYEVK QAFRQLAKKY HPDVCRGNNC GVQFQTINEA YNIVLKQIKN
101: QMEGTEEFQP FDVYEEGFNG MNDPDCDTWE EWMGWEGAGT RDYSSHVNPY A

Best Arabidopsis Sequence Match ( AT1G80920.1 )
(BLAST)

001: MTIALTIGGN GFSGLPGSSF SSSSSSFRLK NSRRKNTKML NRSKVVCSSS SSVMDPYKTL KIRPDSSEYE VKKAFRQLAK KYHPDVCRGS NCGVQFQTIN
101: EAYDIVLKQI KNQMEGTEEF EPFDVYDEGL NGMNDPDCDT WEEWMGWEGA GTRDYSSHVN PYA

Arabidopsis Description

ATJ8Chaperone protein dnaJ 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.