Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96373 | Canola | nucleus | 79.13 | 90.55 |
| AT1G72070.1 | Thale cress | cytosol | 31.74 | 57.94 |
| CDY22291 | Canola | plastid | 17.83 | 27.15 |
| CDX87353 | Canola | plastid | 18.7 | 26.54 |
| CDX67975 | Canola | plastid | 18.26 | 25.93 |
| CDX88567 | Canola | plastid | 18.26 | 25.93 |
| CDX79343 | Canola | plastid | 17.83 | 25.31 |
Protein Annotations
| EnsemblPlants:CDY70323 | EnsemblPlantsGene:GSBRNA2T00098165001 | Gene3D:1.10.287.110 | InterPro:DnaJ_domain | InterPro:IPR001623 | InterPro:IPR036869 |
| InterPro:J_dom_sf | ncoils:Coil | PANTHER:PTHR44360 | PFAM:PF00226 | PFscan:PS50076 | PRINTS:PR00625 |
| ProteinID:CDY70323 | ProteinID:CDY70323.1 | SEG:seg | SMART:SM00271 | SUPFAM:SSF46565 | UniParc:UPI0004EF0BC3 |
| UniProt:A0A078JRZ5 | MapMan:35.2 | : | : | : | : |
Description
BnaCnng67780DBnaCnng67780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRZ5]
Coordinates
chrLK041782:-:344..3214
Molecular Weight (calculated)
25984.1 Da
IEP (calculated)
4.555
GRAVY (calculated)
-0.777
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MFCGLNEAVQ ANESEAISIS DEDHGNPISS VYSENNCVRG RAGGRGRNHR RGRGRDNLDL GDPSRNSSVN RSLRQRYPVL GSQVNNDVVE VVNLESYTDE
101: DDALVYGGLE DLPCWKNSQQ LRRTIPVPPS KPTTATDLSH YTVLGLTPFA SQAEVKRAFK RLALKYHPDV QKGQKKDFKE IISAYQCLMQ KFENQEEEEV
201: EELTELDETD EWEEWMGFEG GIPSCVYTSF
101: DDALVYGGLE DLPCWKNSQQ LRRTIPVPPS KPTTATDLSH YTVLGLTPFA SQAEVKRAFK RLALKYHPDV QKGQKKDFKE IISAYQCLMQ KFENQEEEEV
201: EELTELDETD EWEEWMGFEG GIPSCVYTSF
001: MIRNFRFKAP TNHPGSTIQT DSRRLIQFPT RCCLSPDLSH YTVLGLTPLA SQTEVKRAFK RLALKYHPDV HKGQDKDFKE IKSAYECLMQ KFKKEEEEME
101: ITEMGEIDEW EEWMGFEGGI PSGISY
101: ITEMGEIDEW EEWMGFEGGI PSGISY
Arabidopsis Description
Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IBN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.