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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid, extracellular, vacuole

Predictor Summary:
  • endoplasmic reticulum 4
  • golgi 3
  • extracellular 4
  • plastid 3
  • vacuole 3
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plastid, vacuole
Any Predictor:plastid, secretory
BaCelLo:endoplasmic reticulum, extracellular, golgi
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:plastid
WoLF PSORT:extracellular
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra021448.1-P Field mustard vacuole 83.09 80.71
CDY53028 Canola vacuole 81.62 78.72
CDX80143 Canola vacuole 80.88 78.01
Protein Annotations
MapMan:21.4.1.1.1EntrezGene:819405UniProt:A0A178VXF7ProteinID:AAC63647.1ProteinID:AAM15130.1ProteinID:AEC10913.1
EMBL:AF385686Symbol:AGP26ArrayExpress:AT2G47930EnsemblPlantsGene:AT2G47930RefSeq:AT2G47930TAIR:AT2G47930
RefSeq:AT2G47930-TAIR-GEnsemblPlants:AT2G47930.1TAIR:AT2G47930.1EMBL:AY078007Unigene:At.12951GO:GO:0005575
GO:GO:0005623GO:GO:0005886GO:GO:0008150GO:GO:0009628GO:GO:0016020GO:GO:0016021
GO:GO:0031225GO:GO:0080167RefSeq:NP_566114.1ProteinID:OAP10516.1PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR35725PANTHER:PTHR35725:SF1
UniProt:Q94F57SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00000A6837SEG:seg:
Description
AGP26Classical arabinogalactan protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q94F57]
Coordinates
chr2:-:19616975..19617681
Molecular Weight (calculated)
13983.8 Da
IEP (calculated)
3.417
GRAVY (calculated)
0.563
Length
136 amino acids
Sequence
(BLAST)
001: MSVSLFTAFT VLSLCLHTST SEFQLSTISA APSFLPEAPS SFSASTPAMS PDTSPLFPTP GSSEMSPSPS ESSIMPTIPS SLSPPNPDAV TPDPLLEVSP
101: VGSPLPASSS VCLVSSQLSS LLLVLLMLLL AFCSFF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.