Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 7
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra024839.1-P | |
| Bra024840.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47930.1 | Bra024839.1-P | AT2G01950.1 | 19000166 |
| AT2G47930.1 | Bra024840.1-P | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53028 | Canola | vacuole | 85.71 | 85.11 |
| CDX80143 | Canola | vacuole | 84.29 | 83.69 |
| AT2G47930.1 | Thale cress | endoplasmic reticulum, extracellular, plastid, vacuole | 80.71 | 83.09 |
Protein Annotations
| EnsemblPlants:Bra021448.1 | EnsemblPlants:Bra021448.1-P | EnsemblPlantsGene:Bra021448 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0080167 |
| PANTHER:PTHR35725 | PANTHER:PTHR35725:SF1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI000254491D | UniProt:M4DY52 |
| MapMan:21.4.1.1.1 | : | : | : | : | : |
Description
AT2G47930 (E=1e-028) AGP26, ATAGP26 | AGP26 (ARABINOGALACTAN PROTEIN 26)
Coordinates
chrA01:+:25187113..25187535
Molecular Weight (calculated)
14467.3 Da
IEP (calculated)
3.527
GRAVY (calculated)
0.511
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVVSLLVAF TVLSLCLHTS TSELLQFQLS TISSAAPTFL PEAPSSFSAS PLEAMSPDIS PLFPTPGSSE TSPSPSESFD MPTIPSSLSP PNPDAVSPDP
101: LLDSSPVGSP LPASSSVSLV SSPLSLLLVF PMLILAFCRF
101: LLDSSPVGSP LPASSSVSLV SSPLSLLLVF PMLILAFCRF
001: MSVSLFTAFT VLSLCLHTST SEFQLSTISA APSFLPEAPS SFSASTPAMS PDTSPLFPTP GSSEMSPSPS ESSIMPTIPS SLSPPNPDAV TPDPLLEVSP
101: VGSPLPASSS VCLVSSQLSS LLLVLLMLLL AFCSFF
101: VGSPLPASSS VCLVSSQLSS LLLVLLMLLL AFCSFF
Arabidopsis Description
AGP26Classical arabinogalactan protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q94F57]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.