Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47930.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT2G47930.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80143 | Canola | vacuole | 97.16 | 97.16 |
| Bra021448.1-P | Field mustard | vacuole | 85.11 | 85.71 |
| AT2G47930.1 | Thale cress | endoplasmic reticulum, extracellular, plastid, vacuole | 78.72 | 81.62 |
Protein Annotations
| EnsemblPlants:CDY53028 | EnsemblPlantsGene:GSBRNA2T00008348001 | PANTHER:PTHR35725 | PANTHER:PTHR35725:SF1 | ProteinID:CDY53028 | ProteinID:CDY53028.1 |
| SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EF06D8 | UniProt:A0A078IVR6 | MapMan:21.4.1.1.1 | : |
Description
BnaC04g00020DBnaC04g00020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVR6]
Coordinates
chrLK033154:-:72230..73728
Molecular Weight (calculated)
14447.4 Da
IEP (calculated)
3.592
GRAVY (calculated)
0.431
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVSLFVGLT LLSLCLPTST SELLQFQLST ISAAPSFLPE APSSFSASPP EAMSPDISPL FPTPGSSEMS PSPSESSAMP TIPSSLSPPN PDAVARDPLL
101: DTSPVGSPLP ASSSVSLVSS PLSLLLVFPM LLLLPFSRFS S
101: DTSPVGSPLP ASSSVSLVSS PLSLLLVFPM LLLLPFSRFS S
001: MSVSLFTAFT VLSLCLHTST SEFQLSTISA APSFLPEAPS SFSASTPAMS PDTSPLFPTP GSSEMSPSPS ESSIMPTIPS SLSPPNPDAV TPDPLLEVSP
101: VGSPLPASSS VCLVSSQLSS LLLVLLMLLL AFCSFF
101: VGSPLPASSS VCLVSSQLSS LLLVLLMLLL AFCSFF
Arabidopsis Description
AGP26Classical arabinogalactan protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q94F57]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.