Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54353 | Canola | extracellular | 58.88 | 63.64 |
| AT2G05117.1 | Thale cress | extracellular | 52.34 | 62.22 |
| AT4G15733.1 | Thale cress | extracellular | 43.93 | 54.65 |
Protein Annotations
| EntrezGene:2745709 | MapMan:35.1 | ProteinID:AEE83643.1 | EMBL:AK221079 | EMBL:AL161542 | ArrayExpress:AT4G15735 |
| EnsemblPlantsGene:AT4G15735 | RefSeq:AT4G15735 | TAIR:AT4G15735 | RefSeq:AT4G15735-TAIR-G | EnsemblPlants:AT4G15735.1 | TAIR:AT4G15735.1 |
| EMBL:BT014951 | EMBL:BT015385 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009987 | GO:GO:0031640 | GO:GO:0050832 | RefSeq:NP_974556.1 | UniProt:P82629 | PFAM:PF06876 |
| PANTHER:PTHR34450 | InterPro:SCRL | Symbol:SCRL10 | SignalP:SignalP-noTM | UniParc:UPI000034F1B9 | EMBL:Z97339 |
Description
SCRL10Defensin-like protein 242 [Source:UniProtKB/Swiss-Prot;Acc:P82629]
Coordinates
chr4:+:8963041..8963583
Molecular Weight (calculated)
11909.4 Da
IEP (calculated)
7.539
GRAVY (calculated)
-0.182
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVAIFLAS CVLFSLIPTH LSHEEPKVAP TEELMFAPSN QPRYCRSRQV FDGSCTDRGT PRTTCFLDFL GARSASEMPK NCDCTPQPNN KRLCECSVIC
101: TDCCVKN
101: TDCCVKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.