Factsheet for Bra018155.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019671.1-P	Field mustard	mitochondrion, nucleus	33.91	69.03
Bra018156.1-P	Field mustard	cytosol	5.22	9.3
Bra020538.1-P	Field mustard	plastid	20.43	4.08
Bra036577.1-P	Field mustard	plastid	20.0	3.89
Bra020537.1-P	Field mustard	cytosol	2.17	3.73
Bra013802.1-P	Field mustard	nucleus	1.3	2.83
Bra018423.1-P	Field mustard	plastid	16.09	2.65
GSMUA_Achr9P07390_001	Banana	endoplasmic reticulum, extracellular, plastid	5.65	2.63
Bra031749.1-P	Field mustard	plastid	14.35	2.42
Bra013803.1-P	Field mustard	cytosol	12.61	2.27
Bra010490.1-P	Field mustard	nucleus	0.87	1.89

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra018155	EnsemblPlants:Bra018155.1	EnsemblPlants:Bra018155.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4DNR7	PFAM:PF00046	PFAM:PF02183	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF264	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000253F466	:

Description

AT5G15150 (E=1e-047) ATHB-3, HAT7, ATHB3 | ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA06:+:10670561..10672140

Molecular Weight (calculated)

26624.0 Da

IEP (calculated)

10.566

GRAVY (calculated)

-0.983

Length

230 amino acids

Sequence
(BLAST)

001: MAKKRSRTTC SPDFKLLSQM IFIIPKKLKA GNGVDLETAN GRHNFKNKKA FYTEETPFQV LHGHTGDVLD LAWRRRKLHD QQINDVHGSI RPPPSYSKKP
101: DHDEDNLSDD GSHMMLGGTK KRLNLEQVRA LEKIFELGNK LEPERKMQLG KALGLQPRQI ANWFQNRKSR LKTKQLERDY DTLKKQLDVL KSDNDSLLAH
201: NKKLHDGFHR CQSSNLGFIR TEGRRLDRCS

Best Arabidopsis Sequence Match ( AT3G01220.1 )
(BLAST)

001: MYVFDPTTEA GLRLEMAFPQ HGFMFQQLHE DNSQDQLPSC PPHLFNGGGN YMMNRSMSLM NVQEDHNQTL DEENLSDDGA HTMLGEKKKR LQLEQVKALE
101: KSFELGNKLE PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK NKECNEGNIV KREAEASWSN
201: NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN

Arabidopsis Description

ATHB-20Homeobox-leucine zipper protein ATHB-20 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAT0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.