Factsheet for Bra019671.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018155.1-P	Field mustard	nucleus	69.03	33.91
Bra018156.1-P	Field mustard	cytosol	5.31	4.65
Bra013802.1-P	Field mustard	nucleus	3.54	3.77
Bra010490.1-P	Field mustard	nucleus	2.65	2.83
Bra020538.1-P	Field mustard	plastid	25.66	2.52
GSMUA_Achr9P07390_001	Banana	endoplasmic reticulum, extracellular, plastid	10.62	2.43
Bra036577.1-P	Field mustard	plastid	23.01	2.2
Bra018423.1-P	Field mustard	plastid	18.58	1.51
Bra031749.1-P	Field mustard	plastid	17.7	1.47
Bra013803.1-P	Field mustard	cytosol	14.16	1.25
Bra020537.1-P	Field mustard	cytosol	0.88	0.75

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EnsemblPlantsGene:Bra019671	EnsemblPlants:Bra019671.1	EnsemblPlants:Bra019671.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4DT28
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR14221	PANTHER:PTHR14221:SF8	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000253E6BC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

AT1G48870 (E=1e-027) | WD-40 repeat family protein

Coordinates

chrA06:+:5086674..5087420

Molecular Weight (calculated)

12886.4 Da

IEP (calculated)

9.658

GRAVY (calculated)

-0.491

Length

113 amino acids

Sequence
(BLAST)

001: MAKKRSRTTC SPDFKLLSQM IFIIPKKLKA GNGVDLETAN GRHNFKNKKA FYTEETPFQV LHGHTGDVLD LAWSDSNLLL SASKDKTVRL WRVGCDECLH
101: IFHNNNYSNF LNS

Best Arabidopsis Sequence Match ( AT1G48870.1 )
(BLAST)

001: MMSVGRSEVV VDDLFFDSSD VLSIGEQVVV EEEEVEEAEF QVWSGEPISV EERRVRFLKK MGLLEERCLE RMVSDYSDEV TSSSSDSSLC DSGLQCCVRE
101: ENYGSTTSIS DEELEGVDDD DDDSEEISSN ASTSPSRSSS KKSAKKWLFN CFSAGVKDKD FKYKSSEETM SKVKVKTNKK SHVELSAAYM VQKINGHKGK
201: IWTLKFSPDG KYLATGGEDG VVKIWRITLS DSLLASFLRQ QEPINQQAAL VLFPQKAFHI EETPFQELYG HTGDVLDLAW SDSNLLLSAS KDKTVRLWRT
301: GCDQCLHVFH HNNYVTCVEF NPVNKNNFAS GSIDGKARIW GLSEERVVAW TDVRDSISAI SYQPNGNGFV VGCITGNCRF YQILDNDVIM DEQILIRGRN
401: RITAVEFCPG SSEKILVSSE DSKVRIFDKT QMIHKFKAPS NFGRQSSASF VSSTGKHILS VRRGVGVYLW NNDAFPSRKG AKSSRSFEYF HSPGVSAVAA
501: WTQPETKVSK VAGDDEESRR VMRKIQSSGR LSRSCRVTAT WPEEKLLMNV GSYDSNLPVG EFDLAEAWRL VIVTVSLDGM IRTFHNYGLP RTF

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FVP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.