Factsheet for Bra010490.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08936	Canola	nucleus	100.0	100.0
CDY24839	Canola	nucleus	100.0	100.0
AT4G24440.1	Thale cress	cytosol	99.06	99.06
Bra013802.1-P	Field mustard	nucleus	98.11	98.11
Bra019671.1-P	Field mustard	mitochondrion, nucleus	2.83	2.65
Bra018156.1-P	Field mustard	cytosol	2.83	2.33
Bra020538.1-P	Field mustard	plastid	16.98	1.56
Bra013803.1-P	Field mustard	cytosol	17.92	1.49
Bra036577.1-P	Field mustard	plastid	16.04	1.44
Bra031749.1-P	Field mustard	plastid	17.92	1.4
Bra018423.1-P	Field mustard	plastid	16.98	1.29
Bra018155.1-P	Field mustard	nucleus	1.89	0.87
Bra020537.1-P	Field mustard	cytosol	0.94	0.75
GSMUA_Achr9P07390_001	Banana	endoplasmic reticulum, extracellular, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.287.190	MapMan:15.3.5.1.2	Gene3D:2.30.18.10	EnsemblPlantsGene:Bra010490	EnsemblPlants:Bra010490.1	EnsemblPlants:Bra010490.1-P
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005672
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006367	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR009083	InterPro:IPR009088	UniProt:M4D1Z0	PFAM:PD009224
PFAM:PF02268	PFAM:PF02751	PIRSF:PIRSF009415	PANTHER:PTHR10966	PANTHER:PTHR10966:SF0	SUPFAM:SSF47396
SUPFAM:SSF50784	InterPro:TFIIA_a-hlx	InterPro:TFIIA_b-brl	InterPro:TFIIA_gsu	InterPro:TFIIA_gsu_C	InterPro:TFIIA_gsu_N
UniParc:UPI0002545C32	:	:	:	:	:

Description

AT4G24440 (E=2e-055) | transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

Coordinates

chrA08:-:14795456..14796449

Molecular Weight (calculated)

12166.8 Da

IEP (calculated)

5.707

GRAVY (calculated)

-0.092

Length

106 amino acids

Sequence
(BLAST)

001: MATFELYRRS TIGMCLTETL DEMVQSGTLS PELAIQVLVQ FDKSMTEALE SQVKTKVSIK GHLHTYRFCD NVWTFILQDA MFKIDDRQEN VSRVKIVACD
101: SKLLTQ

Best Arabidopsis Sequence Match ( AT4G24440.1 )
(BLAST)

001: MATFELYRRS TIGMCLTETL DEMVQSGTLS PELAIQVLVQ FDKSMTEALE SQVKTKVSIK GHLHTYRFCD NVWTFILQDA MFKSDDRQEN VSRVKIVACD
101: SKLLTQ

Arabidopsis Description

TFIIA-STranscription initiation factor IIA subunit 2 [Source:UniProtKB/TrEMBL;Acc:A0A178V305]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.