Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010490.1-P | Field mustard | nucleus | 99.06 | 99.06 |
| CDY08936 | Canola | nucleus | 99.06 | 99.06 |
| CDY24839 | Canola | nucleus | 99.06 | 99.06 |
| Bra013802.1-P | Field mustard | nucleus | 98.11 | 98.11 |
| AT1G10760.1 | Thale cress | cytosol, plastid | 18.87 | 1.43 |
| AT5G26570.1 | Thale cress | plastid | 16.04 | 1.42 |
| AT4G24450.3 | Thale cress | cytosol | 15.09 | 1.25 |
| GSMUA_Achr9P07390_001 | Banana | endoplasmic reticulum, extracellular, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.287.190 | MapMan:15.3.5.1.2 | Gene3D:2.30.18.10 | EntrezGene:828546 | UniProt:A0A178V305 | ProteinID:AEE84904.1 |
| ProteinID:AEE84905.1 | EMBL:AJ223634 | EMBL:AK317302 | ArrayExpress:AT4G24440 | EnsemblPlantsGene:AT4G24440 | RefSeq:AT4G24440 |
| TAIR:AT4G24440 | RefSeq:AT4G24440-TAIR-G | EnsemblPlants:AT4G24440.1 | TAIR:AT4G24440.1 | EMBL:AY072192 | EMBL:AY085740 |
| EMBL:AY096423 | EMBL:AY463599 | Unigene:At.25012 | ProteinID:CAB45079.1 | ProteinID:CAB79354.1 | GO:GO:0003674 |
| GO:GO:0003713 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005672 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006367 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0017025 | GO:GO:0045944 | GO:GO:0051091 | GO:GO:0051123 | InterPro:IPR009083 | InterPro:IPR009088 |
| RefSeq:NP_194175.1 | RefSeq:NP_849434.1 | ProteinID:OAP00104.1 | PFAM:PD009224 | PFAM:PF02268 | PFAM:PF02751 |
| PIRSF:PIRSF009415 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR10966 | PANTHER:PTHR10966:SF0 | UniProt:Q39236 | UniProt:Q53YU1 | SUPFAM:SSF47396 | SUPFAM:SSF50784 |
| InterPro:TFIIA_a-hlx | InterPro:TFIIA_b-brl | InterPro:TFIIA_gsu | InterPro:TFIIA_gsu_C | InterPro:TFIIA_gsu_N | UniParc:UPI00000013FC |
| EMBL:X98862 | : | : | : | : | : |
Description
TFIIA-STranscription initiation factor IIA subunit 2 [Source:UniProtKB/TrEMBL;Acc:A0A178V305]
Coordinates
chr4:+:12633180..12634784
Molecular Weight (calculated)
12140.7 Da
IEP (calculated)
5.707
GRAVY (calculated)
-0.142
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MATFELYRRS TIGMCLTETL DEMVQSGTLS PELAIQVLVQ FDKSMTEALE SQVKTKVSIK GHLHTYRFCD NVWTFILQDA MFKSDDRQEN VSRVKIVACD
101: SKLLTQ
101: SKLLTQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.