Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010490.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY08936 | Canola | nucleus | 100.0 | 100.0 |
| AT4G24440.1 | Thale cress | cytosol | 99.06 | 99.06 |
| CDY16527 | Canola | nucleus | 7.55 | 1.99 |
| CDY68027 | Canola | cytosol, plastid | 3.77 | 1.91 |
| CDY28368 | Canola | nucleus | 6.6 | 1.84 |
| CDY16889 | Canola | cytosol, mitochondrion | 6.6 | 1.82 |
| CDX99058 | Canola | nucleus | 6.6 | 1.66 |
| CDY56650 | Canola | nucleus | 6.6 | 1.65 |
| CDY66790 | Canola | plastid | 17.92 | 1.38 |
| CDY34849 | Canola | plastid | 17.92 | 1.38 |
| CDY19771 | Canola | plastid | 15.09 | 1.36 |
| CDX87051 | Canola | plastid | 15.09 | 1.35 |
| CDY20967 | Canola | plastid | 16.98 | 1.31 |
| CDY20604 | Canola | plastid | 16.98 | 1.31 |
| CDY56576 | Canola | plastid | 17.92 | 1.3 |
| CDY05529 | Canola | plastid | 16.04 | 1.3 |
| CDY65142 | Canola | plastid | 16.04 | 1.29 |
| CDY61008 | Canola | plastid | 17.92 | 1.28 |
| GSMUA_Achr9P07390_001 | Banana | endoplasmic reticulum, extracellular, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.287.190 | MapMan:15.3.5.1.2 | Gene3D:2.30.18.10 | GO:A0A078GHQ8 | UniProt:A0A078GHQ8 | ProteinID:CDY08936.1 |
| EnsemblPlants:CDY24839 | ProteinID:CDY24839 | ProteinID:CDY24839.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005672 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006367 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00027319001 |
| InterPro:IPR009083 | InterPro:IPR009088 | PFAM:PD009224 | PFAM:PF02268 | PFAM:PF02751 | PIRSF:PIRSF009415 |
| PANTHER:PTHR10966 | PANTHER:PTHR10966:SF0 | SUPFAM:SSF47396 | SUPFAM:SSF50784 | InterPro:TFIIA_a-hlx | InterPro:TFIIA_b-brl |
| InterPro:TFIIA_gsu | InterPro:TFIIA_gsu_C | InterPro:TFIIA_gsu_N | UniParc:UPI0002545C32 | : | : |
Description
BnaA08g14710DTranscription initiation factor IIA subunit 2 [Source:UniProtKB/TrEMBL;Acc:A0A078GHQ8]
Coordinates
chrLK032164:+:508141..509551
Molecular Weight (calculated)
12166.8 Da
IEP (calculated)
5.707
GRAVY (calculated)
-0.092
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MATFELYRRS TIGMCLTETL DEMVQSGTLS PELAIQVLVQ FDKSMTEALE SQVKTKVSIK GHLHTYRFCD NVWTFILQDA MFKIDDRQEN VSRVKIVACD
101: SKLLTQ
101: SKLLTQ
001: MATFELYRRS TIGMCLTETL DEMVQSGTLS PELAIQVLVQ FDKSMTEALE SQVKTKVSIK GHLHTYRFCD NVWTFILQDA MFKSDDRQEN VSRVKIVACD
101: SKLLTQ
101: SKLLTQ
Arabidopsis Description
TFIIA-STranscription initiation factor IIA subunit 2 [Source:UniProtKB/TrEMBL;Acc:A0A178V305]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.