CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28368	Canola	nucleus	79.95	80.79
CDX99058	Canola	nucleus	88.54	80.57
Bra018156.1-P	Field mustard	cytosol	26.82	79.84
CDY56650	Canola	nucleus	87.5	79.06
CDY16527	Canola	nucleus	81.51	77.67
CDY68027	Canola	cytosol, plastid	10.16	18.66
AT4G24450.3	Thale cress	cytosol	34.64	10.41
CDY61008	Canola	plastid	35.94	9.27
CDY56576	Canola	plastid	35.16	9.27
GSMUA_Achr9P15680_001	Banana	cytosol	26.82	7.92
CDY20967	Canola	plastid	26.3	7.36
CDY20604	Canola	plastid	26.3	7.35
CDY34849	Canola	plastid	25.78	7.17
CDX87051	Canola	plastid	21.88	7.11
CDY66790	Canola	plastid	25.52	7.1
CDY19771	Canola	plastid	21.61	7.04
CDY24839	Canola	nucleus	1.82	6.6
CDY08936	Canola	nucleus	1.82	6.6
CDY65142	Canola	plastid	21.35	6.24
CDY05529	Canola	plastid	21.09	6.17

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:A0A078FV21	UniProt:A0A078FV21	EnsemblPlants:CDY16889	ProteinID:CDY16889
ProteinID:CDY16889.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00094790001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF01326	InterPro:PPDK_PEP-bd	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22931	PANTHER:PTHR22931:SF1
SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56059	UniParc:UPI0004EDB2D0	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

BnaC09g40160DBnaC09g40160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FV21]

Coordinates

chrLK032068:-:118461..121120

Molecular Weight (calculated)

43528.4 Da

IEP (calculated)

10.088

GRAVY (calculated)

-0.462

Length

384 amino acids

Sequence
(BLAST)

001: MAKKRSRTTC SPDFKLLSQM IFIIPKKLKA GNGVDLETAN GRHNFKNKIL SSKKTPFQVL HGHTGDVLDL AWSDSNLLLS ASKDKTVRLW RVGCDECLHI
101: FYLNNYRGGG NYMINRSMTF TGQVKALEKI FELGNKLEPE RKMQLGKALG QSSLKETLKK QFDVLKSDND SLLAHNKKLH DGFHRCQSSN LGVVGTDGAA
201: RNIFFVGSIA FQDVAHKVFA LKVFLNRGDM ARLKEIQEAV LQMSAPKALR NELIHKLRSE RMSYHGDESS WNRSWVAIKK LWASKWNVRA YVSRKLELTH
301: DAICMSVLVQ ESCGDYAFVI HTNNPVTGDP SEIHTRDCEG FGRDLGWRIS RTSNELYHQE NKPQLANREK QKTDSVCMLT PVSI

Best Arabidopsis Sequence Match ( AT4G24450.1 )
(BLAST)

0001: MATSKSQQFQ LIEGMELQIT VTGLPNGSSV RAEFHLKNCT RAWILHWGCI YQGNNHWYIP SEHSSKQGAL QTTFVKSGDA YVVILELRDP RVRAIEFVLK
0101: DGSHNRWLRQ HNGNFRVEIP WNDLHAHHRI PKTLIERRAH KIWDRKGRPQ SSAREQQIDY DNAVRELHAE LARGISLDEL QANSTVPVEK EETSEPHHTM
0201: IQSYRRKHDV QKWLQKYTEP INRSGSVKSS ALAELSKRSV GQENLVSQKS FHVRNYEITV LQRDVKGDCR LWIATNMAGP TVLHWGVAKS SAGEWLIPPP
0301: DVLPEKSKFV HGACQTQFTD MSSREHSYQF IDINLKRGGF VGIQFVIWSG GYWVNNNGAN FVVNLKSADS TSGKLDVDEK YVLKWLLDEI SEREKEAERS
0401: LMHRFNIATE LTERCKDEGE GGCIGIMVWM RFMATRHLTW NKNYNVKPRE ISEALERFTN LMEKIYLQQP NKREIVRLTM ALVGRGGQGD VGQRIRDEIL
0501: VIQRNNHCKS GMMEEWHQKL HNNSSADDVI ICEALLNYVR SDFRIDAYWQ TLQTNGLTKE RLASYDRPIV SEPRFRSDSK EGLIRDLTMY LKTLKAVHSG
0601: ADLESAIDTF LSPSKGHHVF AVNGLSPKLQ DLLNLVKRLV REENTEPLIE KLVDARIQLH PALRAPRTRA KDLLFLDIAL ESCFKTTIEK RLISLNFNNP
0701: PEIIYVICVV LENLCLSIVN NEEIIFCTKD WYRVSEAYRP HDVQWALQTK AVLDRLQLVL ADRCQHYFTI IQPTAKYLGQ LLRVDKHGID VFTEEVIRAG
0801: PGAVLSTLVN RFDPSLRKIA NLGCWQVISS ADAYGFVVCV NELIVVQNKF YSKPTVIIAS KVTGEEEIPA GVVAVLTPSM IDVLSHVSIR ARNSKICFAT
0901: CFDQNVLSNL KSKEGRAISI HTKSTGLVIS DGNNSDVSVR HIFISSVPRG VISKGKKFCG HYVISSKEFT DERVGSKSYN IKFLRERVPS WIKIPTSAAL
1001: PFGTFENILS DDSNKDVARR ISVLKDSLNR GDLTKLKSIQ EAILQMSAPM ALRNELITKL RSERMPYLGD ESGWNRSWVA IKKVWASKWN ERAYVSCKKN
1101: KLDHDAVCMA VLIQEVICGD YAFVIHTNNP VSGDSSEIYT EIVKGLGETL VGAYPGRAMS FITKKTNLKS PTVISYPSKR IGLYSKPSII FRSDSNNEDL
1201: EGNAGAGLYD SVIMDEAEEV VVDYSREPLI MDKSFRVRLF SAIAEAGNVI ESIYGCPQDI EGVVKGGHIY IVQARPQV

Arabidopsis Description

GWD2Alpha-glucan water dikinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9STV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.