CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05529	Canola	plastid	91.1	91.31
CDY19771	Canola	plastid	73.84	82.36
CDX87051	Canola	plastid	73.76	82.06
AT5G26570.1	Thale cress	plastid	73.69	81.02
KRG93123	Soybean	cytosol	16.58	71.95
VIT_05s0062g00890.t01	Wine grape	cytosol	50.65	70.25
GSMUA_Achr9P07400_001	Banana	endoplasmic reticulum, plasma membrane	42.74	64.82
KRH36357	Soybean	plastid	54.75	62.23
Solyc09g098040.2.1	Tomato	plastid	53.38	58.6
HORVU7Hr1G008070.7	Barley	mitochondrion	50.72	58.41
PGSC0003DMT400042818	Potato	cytosol	53.31	58.32
TraesCS7D01G039500.4	Wheat	plastid	51.33	57.3
TraesCS4A01G444300.1	Wheat	plastid	51.1	57.14
TraesCS7A01G043700.1	Wheat	plastid	51.03	56.86
Zm00001d023792_P005	Maize	cytosol	48.14	56.37
Os12t0297500-01	Rice	plastid	51.33	55.97
KXG29990	Sorghum	plastid	51.03	55.14
VIT_05s0062g00900.t01	Wine grape	plastid	7.68	36.73
CDY16889	Canola	cytosol, mitochondrion	6.24	21.35
CDY28368	Canola	nucleus	5.86	20.26
CDY68027	Canola	cytosol, plastid	3.12	19.62
CDY56650	Canola	nucleus	6.16	19.06
CDX99058	Canola	nucleus	6.08	18.96
CDY16527	Canola	nucleus	5.63	18.36
CDY24839	Canola	nucleus	1.29	16.04
CDY08936	Canola	nucleus	1.29	16.04
CDY34849	Canola	plastid	15.97	15.22
CDY66790	Canola	plastid	15.67	14.93
CDY20604	Canola	plastid	15.51	14.85
CDY20967	Canola	plastid	15.36	14.72
CDY56576	Canola	plastid	15.44	13.94
CDY61008	Canola	plastid	14.98	13.24

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.3.1.2	Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.2300	GO:A0A078JIC8
UniProt:A0A078JIC8	InterPro:ATP_grasp_subdomain_1	InterPro:CBM_fam20	EnsemblPlants:CDY65142	ProteinID:CDY65142	ProteinID:CDY65142.1
InterPro:Carb-bd-like_fold	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0030246	GO:GO:2001070	EnsemblPlantsGene:GSBRNA2T00044235001	InterPro:IPR001789	InterPro:IPR002044
InterPro:IPR013783	InterPro:IPR013815	InterPro:Ig-like_fold	PFAM:PF00072	PFAM:PF00686	PFAM:PF01326
InterPro:PPDK_PEP-bd	PFscan:PS50110	PFscan:PS51166	PANTHER:PTHR22931	PANTHER:PTHR22931:SF2	SMART:SM00448
SMART:SM01065	SUPFAM:SSF49452	SUPFAM:SSF52172	SUPFAM:SSF56059	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EDF43E
SEG:seg	:	:	:	:	:

Description

BnaC02g48400DBnaC02g48400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIC8]

Coordinates

chrLK034668:+:13003..21574

Molecular Weight (calculated)

144943.0 Da

IEP (calculated)

5.455

GRAVY (calculated)

-0.244

Length

1315 amino acids

Sequence
(BLAST)

0001: MESIGSHCNT SPFTSITRNS SLPRLVHFTP RVFHIRSQSD SRRLTCSASS STIEEQRMNK DGSGPSRKKV KLNVRLNHQV KFGEHVAIFG SAEEIGSWKE
0101: KSPLTWTETG WVCELHLNGG QPLEFKFVIM KTDGSLSWES GDNRVLNLPK SGAFSVVCHW DATREALDVV SQEEVGEGER VVGSSENGAQ LRKSTLAGEW
0201: KGKEASFMSS NEHGSREVGR SWDTSGLEGP CLKMVEGDRN SRNWWRKLEM VREVIVGSVE REERLKALIY SAVYLKWINT GQIPCFEDGG HHRPNRHAEI
0301: SRLIFRELEN ICSKKDATAE EVLVARKIHP CLPSFKAEFT ASVPLTRIRD IAHRNDIPHD LKQEIKHTIQ NKLHRNAGPE DLIATEAMLE RITETPGKYS
0401: GDFVEQFKIF HNELKDFFNA GSLTEQLDSM KVSMDERDLS ALTLFLECKE RLDASGESSN VLELIKTMHS LASLRETIVK ELNSGLRNDA PDAAIAMRQK
0501: WRLCEIGLED YFFVLLSSRF LNALETMGGA VKLAKDVGSR DVSSWNDPLD ALVLGVHQVG LSGWKQEECL AIGNELLAWR ERDLLEKEGE EDGKTIWAMR
0601: LKATLDRARR LTAEYSDLLL QIFPSNVEIL GRALGIPENS VKTYTEAEIR AGIIFQISKL CTVLLKAVRN TLGSEGWDVI VPGSTFGTLV QVDSIVPGSL
0701: PSTDGGPVIL LVNKADGDEE VSAANGNIAG VMLLQELPHL SHLGEKIVFV TCDDDEKVAD IRRLVGKYVS LEASPSNVNL ILSTEDNKRA DKKSVSVSEE
0801: ESKPVSSSSN SLLHSSKDIP SGGIIALADS DVSTSGSKAA ACGLLASLAA ASTRVHSEHG VPASFKVPTG VVIPFGSMEL ALKQSNSEEK FTSLLEKLET
0901: ATPQDGELDS ICDQIHELMN SLQVPKETIN SISKAFPQDA RLIVRSSANV EDLAGMSAAG LYESIPNVSP SDPSVFSASV CRVWASLYTR RAVLSRRAAG
1001: VSQREASMAV LVQEMLSPDL SFVLHTVSPS DPKSNLVEAE IAPGLGETLA SGTRGTPWRL ASGKLDGIVQ TLAFANFSEE LLVSGKGPAD GKYVRLTVDY
1101: SKKRLTVDSV FRQRLGQRLG SVGFFLERNF GCAQDVEGCL VGEDVNIVQS RPQPLDCNEF LRFHHKHICL EVYNIFLEVF EMAGEVPNLE ASKITALVVD
1201: DNFVNQSVHH KLLDRLGIKN DVVSNGQEAV DVHCSGRNYD LILMDMDMPI MNGIQATRRL REMGIESKIA GVTTRAEEEE VKEFMEAGLN DFQEKPLTIS
1301: KLVSILHNLE FYVQT

Best Arabidopsis Sequence Match ( AT5G26570.1 )
(BLAST)

0001: MESIGSHCCS SPFTFITRNS SSSLPRLVNI THRVNLSHQS HRLRNSNSRL TCTATSSSTI EEQRKKKDGS GTKVRLNVRL DHQVNFGDHV AMFGSAKEIG
0101: SWKKKSPLNW SENGWVCELE LDGGQVLEYK FVIVKNDGSL SWESGDNRVL KVPNSGNFSV VCHWDATRET LDLPQEVGND DDVGDGGHER DNHDVGDDRV
0201: VGSENGAQLQ KSTLGGQWQG KDASFMRSND HGNREVGRNW DTSGLEGTAL KMVEGDRNSK NWWRKLEMVR EVIVGSVERE ERLKALIYSA IYLKWINTGQ
0301: IPCFEDGGHH RPNRHAEISR LIFRELEHIC SKKDATPEEV LVARKIHPCL PSFKAEFTAA VPLTRIRDIA HRNDIPHDLK QEIKHTIQNK LHRNAGPEDL
0401: IATEAMLQRI TETPGKYSGD FVEQFKIFHN ELKDFFNAGS LTEQLDSMKI SMDDRGLSAL NLFFECKKRL DTSGESSNVL ELIKTMHSLA SLRETIIKEL
0501: NSGLRNDAPD TAIAMRQKWR LCEIGLEDYF FVLLSRFLNA LETMGGADQL AKDVGSRNVA SWNDPLDALV LGVHQVGLSG WKQEECLAIG NELLAWRERD
0601: LLEKEGEEDG KTIWAMRLKA TLDRARRLTA EYSDLLLQIF PPNVEILGKA LGIPENSVKT YTEAEIRAGI IFQISKLCTV LLKAVRNSLG SEGWDVVVPG
0701: STSGTLVQVE SIVPGSLPAT SGGPIILLVN KADGDEEVSA ANGNIAGVML LQELPHLSHL GVRARQEKIV FVTCDDDDKV ADIRRLVGKF VRLEASPSHV
0801: NLILSTEGRS RTSKSSATKK TDKNSLSKKK TDKKSLSIDD EESKPGSSSS NSLLYSSKDI PSGGIIALAD ADVPTSGSKS AACGLLASLA EASSKVHSEH
0901: GVPASFKVPT GVVIPFGSME LALKQNNSEE KFASLLEKLE TARPEGGELD DICDQIHEVM KTLQVPKETI NSISKAFLKD ARLIVRSSAN VEDLAGMSAA
1001: GLYESIPNVS PSDPLVFSDS VCQVWASLYT RRAVLSRRAA GVSQREASMA VLVQEMLSPD LSFVLHTVSP ADPDSNLVEA EIAPGLGETL ASGTRGTPWR
1101: LASGKLDGIV QTLAFANFSE ELLVSGTGPA DGKYVRLTVD YSKKRLTVDS VFRQQLGQRL GSVGFFLERN FGCAQDVEGC LVGEDVYIVQ SRPQPL

Arabidopsis Description

GWD3Phosphoglucan, water dikinase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6ZY51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.