Factsheet for Solyc09g098040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042818	Potato	cytosol	90.9	90.6
KRG93123	Soybean	cytosol	18.7	73.93
VIT_05s0062g00890.t01	Wine grape	cytosol	57.93	73.21
GSMUA_Achr9P07400_001	Banana	endoplasmic reticulum, plasma membrane	49.0	67.7
KRH36357	Soybean	plastid	60.1	62.23
Bra020538.1-P	Field mustard	plastid	58.35	60.73
HORVU7Hr1G008070.7	Barley	mitochondrion	57.51	60.33
Bra036577.1-P	Field mustard	plastid	58.76	59.46
CDY19771	Canola	plastid	58.43	59.37
CDX87051	Canola	plastid	58.35	59.14
TraesCS4A01G444300.1	Wheat	plastid	58.01	59.1
Zm00001d023792_P005	Maize	cytosol	55.26	58.95
AT5G26570.1	Thale cress	plastid	58.76	58.86
KXG29990	Sorghum	plastid	59.6	58.67
TraesCS7A01G043700.1	Wheat	plastid	57.76	58.64
TraesCS7D01G039500.4	Wheat	plastid	57.35	58.32
Os12t0297500-01	Rice	plastid	57.6	57.21
CDY65142	Canola	plastid	58.6	53.38
CDY05529	Canola	plastid	58.18	53.12
VIT_05s0062g00900.t01	Wine grape	plastid	10.1	44.0
Solyc05g005020.2.1	Tomato	plastid	18.78	15.36

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.3.1.2	Gene3D:3.30.1490.20	Gene3D:3.30.470.20	InterPro:ATP_grasp_subdomain_1	InterPro:CBM_fam20
InterPro:Carb-bd-like_fold	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005982
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019200	GO:GO:0019538
GO:GO:0030246	GO:GO:0046777	GO:GO:0046835	GO:GO:0051752	GO:GO:2001070	InterPro:IPR002044
InterPro:IPR013783	InterPro:IPR013815	InterPro:Ig-like_fold	UniProt:K4CWX5	PFAM:PF00686	PFAM:PF01326
InterPro:PPDK_PEP-bd	PFscan:PS51166	PANTHER:PTHR22931	PANTHER:PTHR22931:SF2	SMART:SM01065	SUPFAM:SSF49452
SUPFAM:SSF56059	EnsemblPlantsGene:Solyc09g098040.2	EnsemblPlants:Solyc09g098040.2.1	UniParc:UPI000276BF87	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:71950057..71961951

Molecular Weight (calculated)

131885.0 Da

IEP (calculated)

5.711

GRAVY (calculated)

-0.244

Length

1198 amino acids

Sequence
(BLAST)

0001: MDSMHLSHYY SVLNVKKRQP QIKILKQFNV VHQISHTSVR NLTLLPATNL GFFMDRRVKG IVCGVSSVET RENQNKGKNK SSSEKVQLRF RLDHQVEYGE
0101: HIAVLGSAKE LGSWKKNIMM DWTENGWIGE LEVRSGEILE YKFVIVGKDK NMLWENGSNR ILKLPEGGSF ELVCQWNVTD EPVNLLSLDP FEVEKLVEET
0201: SDNGATITSQ AVVPDVVTSP FVEQWQGRAA SFVRSNDQLD SDKNRKWDTS GLTGISLKLV EGDKNARNWW RKLEVVRELV VENMDSSHRL EALTYAAVYL
0301: KWINTGQIPC LEDGGHHRPN RHAEISRLIF REVEKVLSRK DTTLQEILVI RKMQPCLPSF KAEFTASVPL TRIRDIAHRN DIPHDLKQEI KHTIQNKLHR
0401: NAGPEDLVST EAMLERITKQ PGQYSEAFVE QFKIFHNELK DFFNAGSLDE QLESIRESLD GSSLTMLSSF LESKKELVRL DEKHNVSETE RTGFLVRTIN
0501: SLNALREVIS KGLESGLRND APDASIAMRQ KWRLCEIGLE DYAFVLLSRF VNAVEALGGA DWLAENVTVK NVSSWNDPIG ALTVGIQQLG LSGWKPEECK
0601: AVGNELLSWK ERGISEIEGS EDGKTIWALR LKATLDRSRR LTEEYSETLI QIFPEKVQIL GKSLGIPENT VRTFTEAEIR AGVVFQVSKF ATLLLKAVRR
0701: TIGSSGWDVL VPGDAFGELI QVDRIIPGTL PSSATGPVIL VVNKADGDEE VTAAGSNISG VVLLQELPHL SHLGVRARQE KVVFVTCDDD DKVSDVRQLL
0801: GKYVRLEASS TGVKLTASSS EKTGGVSTDK LLSSNASSTG ATSSDSGASS IAVKSSQVKE VGPARGVIPL VDADIQTSGA KAASCAQLAS LATSSTKVYS
0901: DQGAPASFKV PAGAVIPFGS METALETNKL METFTLLVEQ IETAEIDGGE LDKHCEDLQK LISSLLPGQD VIESLGEIFP GNARLIVRSS ANVEDLAGMS
1001: AAGLYDSIPN VSPSDPVRFG HAVARVWASL YTRRAVLSRR AAGVSQKDAT MAVLVQEMLS PDLSFVLHTL SPTDNNHNFI EAEIAPGLGE TLASGTRGTP
1101: WRLSSGKFDD TVRTLAFANF SEEMVVGGNS PADGEVIHLT VDYSKKPLTI DPIFRRQLGQ RLGAVGFYLE RKFGSPQDVE GCLVGNEIFI VQSRPQPQ

Best Arabidopsis Sequence Match ( AT5G26570.1 )
(BLAST)

0001: MESIGSHCCS SPFTFITRNS SSSLPRLVNI THRVNLSHQS HRLRNSNSRL TCTATSSSTI EEQRKKKDGS GTKVRLNVRL DHQVNFGDHV AMFGSAKEIG
0101: SWKKKSPLNW SENGWVCELE LDGGQVLEYK FVIVKNDGSL SWESGDNRVL KVPNSGNFSV VCHWDATRET LDLPQEVGND DDVGDGGHER DNHDVGDDRV
0201: VGSENGAQLQ KSTLGGQWQG KDASFMRSND HGNREVGRNW DTSGLEGTAL KMVEGDRNSK NWWRKLEMVR EVIVGSVERE ERLKALIYSA IYLKWINTGQ
0301: IPCFEDGGHH RPNRHAEISR LIFRELEHIC SKKDATPEEV LVARKIHPCL PSFKAEFTAA VPLTRIRDIA HRNDIPHDLK QEIKHTIQNK LHRNAGPEDL
0401: IATEAMLQRI TETPGKYSGD FVEQFKIFHN ELKDFFNAGS LTEQLDSMKI SMDDRGLSAL NLFFECKKRL DTSGESSNVL ELIKTMHSLA SLRETIIKEL
0501: NSGLRNDAPD TAIAMRQKWR LCEIGLEDYF FVLLSRFLNA LETMGGADQL AKDVGSRNVA SWNDPLDALV LGVHQVGLSG WKQEECLAIG NELLAWRERD
0601: LLEKEGEEDG KTIWAMRLKA TLDRARRLTA EYSDLLLQIF PPNVEILGKA LGIPENSVKT YTEAEIRAGI IFQISKLCTV LLKAVRNSLG SEGWDVVVPG
0701: STSGTLVQVE SIVPGSLPAT SGGPIILLVN KADGDEEVSA ANGNIAGVML LQELPHLSHL GVRARQEKIV FVTCDDDDKV ADIRRLVGKF VRLEASPSHV
0801: NLILSTEGRS RTSKSSATKK TDKNSLSKKK TDKKSLSIDD EESKPGSSSS NSLLYSSKDI PSGGIIALAD ADVPTSGSKS AACGLLASLA EASSKVHSEH
0901: GVPASFKVPT GVVIPFGSME LALKQNNSEE KFASLLEKLE TARPEGGELD DICDQIHEVM KTLQVPKETI NSISKAFLKD ARLIVRSSAN VEDLAGMSAA
1001: GLYESIPNVS PSDPLVFSDS VCQVWASLYT RRAVLSRRAA GVSQREASMA VLVQEMLSPD LSFVLHTVSP ADPDSNLVEA EIAPGLGETL ASGTRGTPWR
1101: LASGKLDGIV QTLAFANFSE ELLVSGTGPA DGKYVRLTVD YSKKRLTVDS VFRQQLGQRL GSVGFFLERN FGCAQDVEGC LVGEDVYIVQ SRPQPL

Arabidopsis Description

GWD3Phosphoglucan, water dikinase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6ZY51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.