CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16889	Canola	cytosol, mitochondrion	80.79	79.95
Bra018156.1-P	Field mustard	cytosol	26.58	78.29
CDX99058	Canola	nucleus	85.26	76.78
CDY56650	Canola	nucleus	84.47	75.53
CDY16527	Canola	nucleus	79.47	74.94
CDY68027	Canola	cytosol, plastid	10.53	19.14
AT4G24450.3	Thale cress	cytosol	35.0	10.41
CDY56576	Canola	plastid	35.79	9.34
CDY61008	Canola	plastid	36.32	9.27
GSMUA_Achr9P15680_001	Banana	cytosol	26.32	7.69
CDY20967	Canola	plastid	26.58	7.36
CDY20604	Canola	plastid	26.58	7.35
CDY34849	Canola	plastid	26.05	7.17
CDY66790	Canola	plastid	25.79	7.1
CDY19771	Canola	plastid	21.05	6.79
CDX87051	Canola	plastid	20.79	6.68
CDY24839	Canola	nucleus	1.84	6.6
CDY08936	Canola	nucleus	1.84	6.6
CDY65142	Canola	plastid	20.26	5.86
CDY05529	Canola	plastid	20.0	5.79

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	Gene3D:2.130.10.10	GO:A0A078GUP9	UniProt:A0A078GUP9	EnsemblPlants:CDY28368
ProteinID:CDY28368	ProteinID:CDY28368.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00040175001
InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF00400	PFAM:PF02183	PFscan:PS50071	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22931	PANTHER:PTHR22931:SF1	SMART:SM00320	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF50978	SUPFAM:SSF56059	UniParc:UPI0004EDDB9E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

BnaC01g35380DBnaC01g35380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUP9]

Coordinates

chrLK032218:+:372674..375212

Molecular Weight (calculated)

43481.3 Da

IEP (calculated)

10.088

GRAVY (calculated)

-0.569

Length

380 amino acids

Sequence
(BLAST)

001: MAKKRSRTTC SPDFKLLSQM IFIIPKKLKA GNGVDLETAN GRRNFKNKKF SDPATVTKWK DERMKAFYTE ETPFQVLHGH TGDVLDLAWS DSNLLLSASK
101: DKTVRLWRVG CDECLHIFHH NDYRGGGNYM INRSMTFTGQ VRALEKIFEL GNKLEPERKM QLGKALGLQP RQIANCFQNR KARLKTKQLE RDYDTLKKQF
201: DVLKSDNHSL LGHNKKLHDG FHRCQSSNLG VVGTDGAARN IFFVGSIAFQ DVAHKVSALK DFLNRGDMAR LKEIQEAFLQ MSAPKALRNE LIHKLRSERM
301: LYHGDESSWN RSWMAIKKLW ASKWNVRAYV SRKLELTHDA VCMSVLVQES CGDYAFVIHT NNPVTGDPSE IHTRDCEGFG

Best Arabidopsis Sequence Match ( AT4G24450.1 )
(BLAST)

0001: MATSKSQQFQ LIEGMELQIT VTGLPNGSSV RAEFHLKNCT RAWILHWGCI YQGNNHWYIP SEHSSKQGAL QTTFVKSGDA YVVILELRDP RVRAIEFVLK
0101: DGSHNRWLRQ HNGNFRVEIP WNDLHAHHRI PKTLIERRAH KIWDRKGRPQ SSAREQQIDY DNAVRELHAE LARGISLDEL QANSTVPVEK EETSEPHHTM
0201: IQSYRRKHDV QKWLQKYTEP INRSGSVKSS ALAELSKRSV GQENLVSQKS FHVRNYEITV LQRDVKGDCR LWIATNMAGP TVLHWGVAKS SAGEWLIPPP
0301: DVLPEKSKFV HGACQTQFTD MSSREHSYQF IDINLKRGGF VGIQFVIWSG GYWVNNNGAN FVVNLKSADS TSGKLDVDEK YVLKWLLDEI SEREKEAERS
0401: LMHRFNIATE LTERCKDEGE GGCIGIMVWM RFMATRHLTW NKNYNVKPRE ISEALERFTN LMEKIYLQQP NKREIVRLTM ALVGRGGQGD VGQRIRDEIL
0501: VIQRNNHCKS GMMEEWHQKL HNNSSADDVI ICEALLNYVR SDFRIDAYWQ TLQTNGLTKE RLASYDRPIV SEPRFRSDSK EGLIRDLTMY LKTLKAVHSG
0601: ADLESAIDTF LSPSKGHHVF AVNGLSPKLQ DLLNLVKRLV REENTEPLIE KLVDARIQLH PALRAPRTRA KDLLFLDIAL ESCFKTTIEK RLISLNFNNP
0701: PEIIYVICVV LENLCLSIVN NEEIIFCTKD WYRVSEAYRP HDVQWALQTK AVLDRLQLVL ADRCQHYFTI IQPTAKYLGQ LLRVDKHGID VFTEEVIRAG
0801: PGAVLSTLVN RFDPSLRKIA NLGCWQVISS ADAYGFVVCV NELIVVQNKF YSKPTVIIAS KVTGEEEIPA GVVAVLTPSM IDVLSHVSIR ARNSKICFAT
0901: CFDQNVLSNL KSKEGRAISI HTKSTGLVIS DGNNSDVSVR HIFISSVPRG VISKGKKFCG HYVISSKEFT DERVGSKSYN IKFLRERVPS WIKIPTSAAL
1001: PFGTFENILS DDSNKDVARR ISVLKDSLNR GDLTKLKSIQ EAILQMSAPM ALRNELITKL RSERMPYLGD ESGWNRSWVA IKKVWASKWN ERAYVSCKKN
1101: KLDHDAVCMA VLIQEVICGD YAFVIHTNNP VSGDSSEIYT EIVKGLGETL VGAYPGRAMS FITKKTNLKS PTVISYPSKR IGLYSKPSII FRSDSNNEDL
1201: EGNAGAGLYD SVIMDEAEEV VVDYSREPLI MDKSFRVRLF SAIAEAGNVI ESIYGCPQDI EGVVKGGHIY IVQARPQV

Arabidopsis Description

GWD2Alpha-glucan water dikinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9STV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.