CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75202	Canola	nucleus	91.47	90.77
AT4G31875.1	Thale cress	cytosol	47.29	44.2

Protein Annotations

EnsemblPlants:CDX68797	EnsemblPlantsGene:GSBRNA2T00130515001	ProteinID:CDX68797	ProteinID:CDX68797.1	SEG:seg	UniParc:UPI0004EDCF4A
MapMan:35.2	:	:	:	:	:

Description

BnaC01g06560D

Coordinates

chrLK031789:-:1314941..1317805

Molecular Weight (calculated)

15069.0 Da

IEP (calculated)

8.229

GRAVY (calculated)

-0.648

Length

129 amino acids

Sequence
(BLAST)

001: MEESSERVVR LEQHDEITMG DDLIIHSIPQ DLALAVSAIY DLMMVDVEEL LFNQIRDTFL SYTTPSYLGF VGLPDEECQR PRPALCKARR RRDPPPRVSR
101: RSSQVSPPIY LRHRFLPQSR KDSSSRRQR

Best Arabidopsis Sequence Match ( AT4G31875.1 )
(BLAST)

001: MEETSESLAC RLEKYKLIET STIDTAVSYR RLILDFDEDL LNRRRELATA FNSFVWPVFE PIENSFDWPV YSVFLDPEDL LLGEVCEEPR TPLIKTRKIR
101: DPPPRVSRRS SQVSRPIYLR HRFLPQSRKQ SSSSRRQR

Arabidopsis Description

At4g31872/At4g31872 [Source:UniProtKB/TrEMBL;Acc:Q93ZC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.