CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85489	Sorghum	cytosol, peroxisome, plasma membrane	74.31	77.99
OQU87146	Sorghum	cytosol, plasma membrane	30.49	74.79
OQU87144	Sorghum	plasma membrane	61.11	68.7
KXG32868	Sorghum	plasma membrane	67.5	66.9
VIT_11s0016g04540.t01	Wine grape	cytosol, peroxisome, plasma membrane	60.28	61.08
KRH03783	Soybean	cytosol, nucleus, plasma membrane	57.57	58.46
KRH56668	Soybean	cytosol, nucleus, plasma membrane	57.5	58.39
VIT_04s0008g04230.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	57.5	58.27
Os09t0332700-01	Rice	cytosol	19.1	57.65
KXG35386	Sorghum	cytosol	7.22	53.89
OQU78699	Sorghum	cytosol, nucleus, plasma membrane	50.9	49.26
KXG22958	Sorghum	cytosol, nucleus, plasma membrane	50.62	47.96
OQU91495	Sorghum	cytosol, nucleus, plasma membrane	40.35	47.24
OQU89275	Sorghum	cytosol	5.49	39.7
EER93921	Sorghum	cytosol	3.96	30.32
OQU79331	Sorghum	plasma membrane	17.71	20.4
OQU79332	Sorghum	plastid	4.1	18.91

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	EntrezGene:8071667	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2
InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like	UniProt:C5XXZ1	ncoils:Coil	EnsemblPlants:EES04730
ProteinID:EES04730	ProteinID:EES04730.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005	PFAM:PF01061
PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF443	SMART:SM00382
EnsemblPlantsGene:SORBI_3004G087800	SUPFAM:SSF52540	unigene:Sbi.21128	TMHMM:TMhelix	UniParc:UPI0001A857D4	RefSeq:XP_002451754.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:7435120..7442061

Molecular Weight (calculated)

162419.0 Da

IEP (calculated)

6.658

GRAVY (calculated)

0.062

Length

1440 amino acids

Sequence
(BLAST)

0001: MDLVRMGSIA SGSMRRTASS WRASGRSDAF GRSVREEDDE EALRWAAIEK LPTYDRMRKG ILTGAGAGFE EVDIQGLGME ERKNLIERLV RTAEEDNERF
0101: LLKLRDRMER VGIDNPTIEV RFEHLNIDAE AYVGNRGIPT MTNFFSNKIM DALSAMHIVA SGKRPISILH DISGVIRPGR MSLLLGPPGS GKTSLLLALS
0201: GKLDSTLKVS GRVTYNGHDM DEFVPQRTSA YIGQHDIHVG EMTVRETLSF SARCQGVGTR YDMLTELSRR EKEANIQPDP DIDVYMKAIS VEGQESVVTD
0301: YILKILGLEV CADTMVGDSM IRGISGGQKK RVTTGEMLVG PAKALFMDEI STGLDSSTTY QIVNSLRQSV HILGGTALIA LLQPAPETYE LFDDIVLLSE
0401: GQIVYQGPRE NVLEFFEAMG FKCPERKGVA DFLQEVTSRK DQHQYWCRRD ERYRYISVND FSEAFKAFHV GRKLGTELKE PFDRTRNHPA ALTTSKYGIS
0501: KMELLKACFS REWLLMKRNS FVYIFKVVQL IILGTIAMTV FLRTTMHRRG VEDGVIFLGA MFLGLVTHLF NGFAELAMSI AKLPIFYKQR DLLFYPSWAY
0601: ALPTWLLKIP ISFLECAVWI GMTYYVIGFD PNIERFFRHY LLLVLISQMA SGLFRLLAAV GREMVVADTF GSFAQLVLLI LGGFLIARDN IKKYWIWGYW
0701: SSPLMYAQNA IAVNEFLGHS WQKVVDSTHS NDTLGVQILK ARGIFVDPNW YWIGVGALLG YIMLFNVLFI LFLDWLGPLG QGQAVVSEEE LREKHVNRTG
0801: ENVELLALGT SSQNSPSDGR GEIAGAETRN RGMALPFTPL SITFDNVKYS VDMPQEMKDK GITEDRLLLL KGVSGAFRPG VLTALMGVSG AGKTTLMDVL
0901: AGRKTGGYIE GDISISGYPK KQETFARIAG YCEQNDIHSP HVTVYESLLY SAWLRLPHEV DSEARKMFVE QVMELVELTP LRGALVGLPG VNGLSTEQRK
1001: RLTIAVELVA NPSIIFMDEP TSGLDARAAA IVMRAVRNTV DTGRTVVCTI HQPSIDIFEA FDELFLMKRG GEEIYVGPLG RNSCHLIDYF EGIEGVKKIK
1101: DGYNPATWML EVTTLSQEDI LGINFAEVYR NSDLYRRNKA LISELSIPPP GSRDLYFPTQ YSQSFLTQCM ACLWKQHKSY WRNPSYTATR IFFTTVIALI
1201: FGTIFLNLGK KIGTRQDLLY ALGSMYAAVL FIGIQNGQTV QPIVDVERTV FYREKAAGMY SALPYAFAQV LIEIPHIFLQ TVVYGLIVYS LIGFEWTAEK
1301: FLWYMFFMFF TFMYFTFYGM MAVAMTPNSD IAAIVSTAFY AIWNIFAGFL IPRPRIPIWW RWYSWACPVA WTLYGLVASQ FGDITDVRLE DDEIVKDFVN
1401: RFFGFYHDDL AYVATAVVGF TVLFAFVFAF SIKVFNFQRR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.