Factsheet for GSMUA_Achr10P01870_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 1
cytosol 1
plastid 3
extracellular 4
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	36.11	42.62
TraesCS5A01G420900.1	Wheat	vacuole	36.11	11.45
Solyc01g097530.1.1	Tomato	plasma membrane	11.11	7.48
HORVU1Hr1G017870.1	Barley	extracellular, vacuole	0.0	0.0
PGSC0003DMT400004989	Potato	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009635	GO:GO:0009772	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0016682
GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr10G01870_001	EnsemblPlants:GSMUA_Achr10P01870_001	EnsemblPlants:GSMUA_Achr10T01870_001	InterPro:IPR036854	UniProt:M0REL4	PFAM:PF00124
PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix
UniParc:UPI0002968F52	:	:	:	:	:

Description

Photosystem Q(B) protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G01870_001]

Coordinates

chr10:+:4332901..4333199

Molecular Weight (calculated)

8009.0 Da

IEP (calculated)

7.577

GRAVY (calculated)

0.826

Length

72 amino acids

Sequence
(BLAST)

1: MPLGISGTFN FMIVFQAEHN ILMHLFHMLG VALVYSALVL CMVPWSTLSI VVAHGYLSRL NCQYASFNNS TS

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.