Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P22160_001 | Banana | cytosol | 100.0 | 100.0 |
| TraesCS3A01G530400.1 | Wheat | cytosol | 98.46 | 98.46 |
| TraesCS3A01G530600.1 | Wheat | cytosol | 98.46 | 98.46 |
| TraesCS3D01G535900.1 | Wheat | cytosol | 98.46 | 98.46 |
| TraesCS4A01G167400.1 | Wheat | cytosol | 98.46 | 98.46 |
| TraesCS4D01G157600.1 | Wheat | golgi, plastid, unclear | 98.46 | 98.46 |
| Zm00001d047697_P002 | Maize | cytosol | 98.46 | 98.46 |
| GSMUA_Achr9P07400_001 | Banana | endoplasmic reticulum, plasma membrane | 21.54 | 1.61 |
| GSMUA_Achr9P15680_001 | Banana | cytosol | 24.62 | 1.23 |
| GSMUA_Achr3P14470_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 24.62 | 0.99 |
| GSMUA_Achr9P07390_001 | Banana | endoplasmic reticulum, extracellular, plastid | 0.0 | 0.0 |
| Os06t0498450-00 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.3.1.30 | Gene3D:2.40.50.140 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr9G25360_001 | EnsemblPlants:GSMUA_Achr9P25360_001 |
| EnsemblPlants:GSMUA_Achr9T25360_001 | UniProt:M0SR29 | HAMAP:MF_00292 | InterPro:NA-bd_OB-fold | PFAM:PD005541 | PFAM:PF01200 |
| ScanProsite:PS00961 | PANTHER:PTHR10769 | PANTHER:PTHR10769:SF6 | InterPro:Ribosomal_S28e | InterPro:Ribosomal_S28e_CS | SUPFAM:SSF50249 |
| UniParc:UPI000296AD3E | SEG:seg | : | : | : | : |
Description
40S ribosomal protein S28 [Source:GMGC_GENE;Acc:GSMUA_Achr9G25360_001]
Coordinates
chr9:+:29878850..29880930
Molecular Weight (calculated)
7436.2 Da
IEP (calculated)
11.722
GRAVY (calculated)
-0.466
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: MDTQAKLAVV VKVMGRTGSR GQVTQVRVKF LDDQNRLIMR NVKGPVREGD ILTLLESERE ARRLR
1: MDSQIKHAVV VKVMGRTGSR GQVTQVRVKF TDSDRYIMRN VKGPVREGDI LTLLESEREA RRLR
Arabidopsis Description
RPS28A40S ribosomal protein S28-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR73]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.