Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G004100.1 | Wheat | golgi | 77.5 | 83.78 |
| HORVU5Hr1G000660.2 | Barley | extracellular | 51.25 | 48.52 |
| HORVU5Hr1G000710.1 | Barley | extracellular | 46.88 | 39.47 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.1 | UniProt:A0A287Q635 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | GO:GO:0003674 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| GO:GO:0009405 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0042742 | GO:GO:0090729 | EnsemblPlantsGene:HORVU5Hr1G000680 |
| EnsemblPlants:HORVU5Hr1G000680.1 | PFAM:PF00234 | PANTHER:PTHR33454 | SMART:SM00499 | SUPFAM:SSF47699 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000B4811E0 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:2540146..2540872
Molecular Weight (calculated)
17619.1 Da
IEP (calculated)
8.256
GRAVY (calculated)
-0.242
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: SSSPAPKHID NMKAFFLVGL LALVASAAFA QYGEVVGSYE GGAGGGGAQQ CPLGTKLDSC RNYLLDRCTT MKDFPVTWRW WTWWKGGCEE LLHDCCSQLS
101: QMPPQCRCNI IQGSIQRDLG GFFGFQRDRT VKVIQAAKNL PPRCNQGPAC NIPSTTGYYW
101: QMPPQCRCNI IQGSIQRDLG GFFGFQRDRT VKVIQAAKNL PPRCNQGPAC NIPSTTGYYW
001: MANKLFLVCA ALALCFILTN ASVYRTVVEF DEDDASNPIG PIQKCQKEFQ QDQHLRACQR WMRKQMWQGR GGGPSLDDEF DMEDDIENPQ RRQLLQKCCS
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY
Arabidopsis Description
AT2S42S seed storage protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P15460]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.