Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 2
- plastid 1
- plasma membrane 2
- extracellular 4
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
26928395
|
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G003300.1 | Wheat | golgi | 73.16 | 84.76 |
| TraesCS5B01G003500.1 | Wheat | golgi | 71.58 | 82.93 |
| TraesCS5D01G004000.1 | Wheat | golgi | 70.53 | 81.71 |
| HORVU5Hr1G000680.1 | Barley | endoplasmic reticulum, extracellular | 39.47 | 46.88 |
| HORVU5Hr1G000660.2 | Barley | extracellular | 40.53 | 45.56 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G000710.1 | EnsemblPlantsGene:HORVU5Hr1G000710 | Gene3D:1.10.110.10 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | PANTHER:PTHR33454 |
| PFAM:PF00234 | SEG:seg | SMART:SM00499 | SUPFAM:SSF47699 | UniParc:UPI0002950FCF | UniProt:M0VAF1 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:2571047..2571619
Molecular Weight (calculated)
21345.4 Da
IEP (calculated)
5.980
GRAVY (calculated)
-0.276
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHHPCINSV PISSIHVHHY QNNIDNMKTF FLLSFLALVA STAIAQYAEV PSPAAEVPTG DGFGEWVAMT PSVSGSEQCE QEQPKLNSCS DYVMDRCVTK
101: DMLLSWVFPR TWGKRSCEEV QDQCCQQLRQ TTPDCRCKAI WTSIQGDLSG FMSFQQGLEA RTLQMAKSLP SKCNIDPKYC NIPITSGYYW
101: DMLLSWVFPR TWGKRSCEEV QDQCCQQLRQ TTPDCRCKAI WTSIQGDLSG FMSFQQGLEA RTLQMAKSLP SKCNIDPKYC NIPITSGYYW
001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
Arabidopsis Description
AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.