Factsheet for TraesCS5B01G003500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G004000.1	Wheat	golgi	90.85	90.85
TraesCS5A01G003300.1	Wheat	golgi	89.02	89.02
HORVU5Hr1G000710.1	Barley	extracellular	82.93	71.58
TraesCS7B01G431200.1	Wheat	extracellular	45.12	49.33

Protein Annotations

EnsemblPlants:TraesCS5B01G003500.1	EnsemblPlantsGene:TraesCS5B01G003500	Gene3D:1.10.110.10	InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	PANTHER:PTHR33454
PFAM:PF00234	SEG:seg	SignalP:SignalP-noTM	SMART:SM00499	SUPFAM:SSF47699	TIGR:cd00261
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:5057454..5057948

Molecular Weight (calculated)

18450.2 Da

IEP (calculated)

7.856

GRAVY (calculated)

-0.220

Length

164 amino acids

Sequence
(BLAST)

001: MKTFFLLAFL ALVVSTTIAQ YAEVPSPAMQ APTADVFGEW VAIAPSASGF EDCEEEHPKL DSCSDYVMDR CVMKDMPLSW IFPRTWGKRS CEEVRNQCCQ
101: QLRQTTPRCR CKAIWTSIQG DLSGFKGVQQ GLKARTVQTA KSLPSKCNID PKYCNIPITS GYYW

Best Arabidopsis Sequence Match ( AT4G27140.1 )
(BLAST)

001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY

Arabidopsis Description

AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.