Factsheet for TraesCS5D01G004000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G003500.1	Wheat	golgi	90.85	90.85
TraesCS5A01G003300.1	Wheat	golgi	89.02	89.02
HORVU5Hr1G000710.1	Barley	extracellular	81.71	70.53
TraesCS5D01G004300.1	Wheat	golgi	46.95	52.03
TraesCS7D01G504800.1	Wheat	extracellular	42.68	46.98
TraesCS5D01G004100.1	Wheat	golgi	41.46	45.95

Protein Annotations

EnsemblPlants:TraesCS5D01G004000.1	EnsemblPlantsGene:TraesCS5D01G004000	Gene3D:1.10.110.10	GO:GO:0003674	GO:GO:0004867	GO:GO:0030234
InterPro:Allergen/soft/tryp_amyl_inhib	InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	PANTHER:PTHR33454	PFAM:PF00234	PRINTS:PR00808
SEG:seg	SignalP:SignalP-noTM	SMART:SM00499	SUPFAM:SSF47699	TIGR:cd00261	MapMan:35.1

Description

No Description!

Coordinates

chr5D:+:3571184..3571678

Molecular Weight (calculated)

18196.8 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.209

Length

164 amino acids

Sequence
(BLAST)

001: MKTFFLLAFL ALVVSTAIAQ YAEVPSPAAQ APTADGFGEW VAIAPSASGS ENCEEEQPKV DSCSDYVMDR CVMKDMPLSW FFPRTWGKRS CEEVRNQCCK
101: QLRQTTSRCR CKAIWTSIQG DLSGFKGLQQ GLKARTVQTA KSLPTQCNID PKFCNIPITS GYYL

Best Arabidopsis Sequence Match ( AT4G27140.1 )
(BLAST)

001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY

Arabidopsis Description

AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.