Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
23128297
nucleus: 28628250 |
msms PMID:
28628250
doi
LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G000680.1 | Barley | endoplasmic reticulum, extracellular | 83.78 | 77.5 |
| TraesCS5D01G004300.1 | Wheat | golgi | 58.78 | 58.78 |
| TraesCS7D01G504800.1 | Wheat | extracellular | 49.32 | 48.99 |
| TraesCS5D01G004000.1 | Wheat | golgi | 45.95 | 41.46 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G004100.1 | EnsemblPlantsGene:TraesCS5D01G004100 | Gene3D:1.10.110.10 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | PANTHER:PTHR33454 |
| PFAM:PF00234 | SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TIGR:cd00261 | MapMan:35.1 |
Description
No Description!
Coordinates
chr5D:+:3591495..3592002
Molecular Weight (calculated)
16387.8 Da
IEP (calculated)
8.409
GRAVY (calculated)
-0.172
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MKALFLIGLL ALVASTAFAQ YSEVVGSYDV AGGGGAQQCP VETKLNSCRN YLLDRCSTMK DFPVTWRWWK WWKGGCQELL GECCSRLGQM PPQCRCNIIQ
101: GSIQGDLGGI FGFQRDRASK VIQEAKNLPP RCNQGPPCNI PGTIGYYW
101: GSIQGDLGGI FGFQRDRASK VIQEAKNLPP RCNQGPPCNI PGTIGYYW
001: MANKLFLVCA ALALCFILTN ASVYRTVVEF DEDDASNPIG PIQKCQKEFQ QDQHLRACQR WMRKQMWQGR GGGPSLDDEF DMEDDIENPQ RRQLLQKCCS
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY
Arabidopsis Description
AT2S42S seed storage protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P15460]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.