CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11763	Soybean	extracellular	97.12	96.56
KRH36764	Soybean	nucleus	80.69	78.87
KRH36769	Soybean	endoplasmic reticulum	79.25	78.57
KRH11762	Soybean	endoplasmic reticulum	80.12	78.53
KRH11765	Soybean	extracellular	78.1	77.43
KRH11766	Soybean	extracellular	57.06	75.86
KRH11767	Soybean	extracellular, golgi	78.1	75.7
KRH36768	Soybean	extracellular	73.78	73.78
KRH36770	Soybean	extracellular	74.06	73.64
KRH11761	Soybean	cytosol	40.06	71.28
KRH36763	Soybean	extracellular	68.88	67.9
KRH11764	Soybean	extracellular	53.31	63.14
VIT_06s0004g01180.t01	Wine grape	extracellular	58.5	59.53
KRG95399	Soybean	extracellular	56.48	59.21
KRH71834	Soybean	extracellular	55.33	58.01
KRH38084	Soybean	extracellular	55.33	58.01
KRH67078	Soybean	plastid	57.06	55.31
KRH02680	Soybean	extracellular, vacuole	47.26	49.4
KRH19217	Soybean	extracellular, vacuole	46.97	49.39
KRH02678	Soybean	extracellular, vacuole	46.69	48.94
KRH37428	Soybean	extracellular	44.09	48.88
KRH08162	Soybean	extracellular	44.67	46.83
KRH12435	Soybean	extracellular	34.58	46.51
KRH28727	Soybean	extracellular, nucleus	44.09	46.22
KRH76737	Soybean	extracellular, mitochondrion	44.09	46.22
KRH69854	Soybean	extracellular, nucleus	44.09	46.22
KRH28504	Soybean	extracellular, plasma membrane	43.52	46.18
KRH76956	Soybean	extracellular	42.94	45.57
KRH71183	Soybean	extracellular, golgi, vacuole	43.23	45.18
KRH04663	Soybean	cytosol	33.14	44.57
KRH71067	Soybean	extracellular	42.36	43.62
KRH77230	Soybean	extracellular	40.92	42.77
KRH50238	Soybean	extracellular	41.5	42.6
KRH02395	Soybean	extracellular	39.48	42.55
KRH08164	Soybean	endoplasmic reticulum, plasma membrane	42.94	42.45
KRH05871	Soybean	extracellular, golgi	41.79	42.27
KRH15137	Soybean	extracellular	41.79	42.15
KRH71182	Soybean	extracellular	40.92	42.01
KRH50693	Soybean	extracellular	39.48	41.27
KRH36427	Soybean	extracellular, golgi	40.06	40.64
KRH27544	Soybean	extracellular	39.19	40.12
KRG89577	Soybean	cytosol	24.78	37.07
KRH75211	Soybean	cytosol	41.21	25.22

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	MapMan:35.1	EMBL:ACUP02005393	EnsemblPlantsGene:GLYMA_09G022500
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016491	GO:GO:0020037	GO:GO:0042744	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869
InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac	UniProt:I1L0D5	InterPro:IPR002016	EnsemblPlants:KRH36765	ProteinID:KRH36765
ProteinID:KRH36765.1	PFAM:PF00141	PRINTS:PR00458	PRINTS:PR00461	ScanProsite:PS00435	PFscan:PS50873
PANTHER:PTHR31388	PANTHER:PTHR31388:SF97	MetaCyc:PWY-5461	MetaCyc:PWY-5466	MetaCyc:PWY-5469	MetaCyc:PWY-6824
MetaCyc:PWY-7214	MetaCyc:PWY-7445	InterPro:Peroxidase_pln	InterPro:Peroxidases_heam-ligand_BS	SUPFAM:SSF48113	InterPro:Secretory_peroxidase
SignalP:SignalP-noTM	UniParc:UPI0001B63F45	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:1804761..1807103

Molecular Weight (calculated)

37271.1 Da

IEP (calculated)

5.304

GRAVY (calculated)

-0.020

Length

347 amino acids

Sequence
(BLAST)

001: MKVTVVCCVL VVLGALPFSS DAQLDPSFYR DTCPKVHSIV REVVRNVSKS DPRMLASLIR LHFHDCFVQG CDASILLNNT ATIESEQQAF PNNNSIRGLD
101: VVNQIKTAVE NACPGVVSCA DILALAAEIS SVLGHGPDWK VPLGRRDSLT ANRTLANQNL PAPFFNLTQL KDAFAVQGLN TTDLVALSGA HTIGRAQCRF
201: FVDRLYNFSS TGNPDPTLNT TYLQTLSAIC PNGGPGTNLT NFDPTTPDTV DSNYYSNLQV NKGLLQSDQE LFSTTGADTI AIVNSFSSNQ TLFFENFKAS
301: MIKMGNIGVL TGSQGEIRQQ CNFINGNSAG LATLATKESS DGMVSSI

Best Arabidopsis Sequence Match ( AT5G06730.1 )
(BLAST)

001: MAVTSSSSTC DGFFIISLIV IVSSLFGTSS AQLNATFYSG TCPNASAIVR STIQQALQSD ARIGGSLIRL HFHDCFVNGC DGSLLLDDTS SIQSEKNAPA
101: NANSTRGFNV VDSIKTALEN ACPGIVSCSD ILALASEASV SLAGGPSWTV LLGRRDGLTA NLSGANSSLP SPFEGLNNIT SKFVAVGLKT TDVVSLSGAH
201: TFGRGQCVTF NNRLFNFNGT GNPDPTLNST LLSSLQQLCP QNGSNTGITN LDLSTPDAFD NNYFTNLQSN NGLLQSDQEL FSNTGSATVP IVNSFASNQT
301: LFFEAFVQSM IKMGNISPLT GSSGEIRQDC KVVNGQSSAT EAGDIQLQSD GPVSVADM

Arabidopsis Description

PER54Peroxidase 54 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG34]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.