Factsheet for Os05t0101400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0518100-01	Rice	golgi, plastid	2.92	0.81
Os05t0101600-01	Rice	endoplasmic reticulum, plasma membrane	2.92	0.77
PGSC0003DMT400052818	Potato	cytosol	1.46	0.48
Os07t0519300-01	Rice	peroxisome, plastid	1.46	0.44
Os07t0519100-01	Rice	endoplasmic reticulum, golgi	1.46	0.42
Os07t0518500-02	Rice	plasma membrane	1.46	0.41
Solyc08g007050.1.1	Tomato	endoplasmic reticulum	1.46	0.4
Os06t0110000-01	Rice	plasma membrane	1.46	0.4
Os06t0110100-01	Rice	cytosol	0.73	0.33
Os02t0703600-01	Rice	golgi	0.73	0.24
Os07t0519600-00	Rice	endoplasmic reticulum, golgi, vacuole	0.73	0.21
Solyc10g007860.2.1	Tomato	endoplasmic reticulum, extracellular	0.73	0.21
Solyc12g006460.1.1	Tomato	extracellular, golgi	0.73	0.21
PGSC0003DMT400062367	Potato	extracellular, golgi	0.73	0.21
Os07t0520300-01	Rice	golgi, plastid	0.73	0.2
Os09t0457100-01	Rice	endoplasmic reticulum	0.73	0.2
Os08t0472800-01	Rice	endoplasmic reticulum, golgi	0.73	0.2
Os07t0491800-01	Rice	cytosol, mitochondrion, nucleus	0.73	0.19
Os10t0378000-00	Rice	plastid	0.0	0.0
Os10t0378100-01	Rice	endoplasmic reticulum, golgi	0.0	0.0
Os07t0520100-00	Rice	mitochondrion	0.0	0.0
PGSC0003DMT400069113	Potato	endoplasmic reticulum, extracellular	0.0	0.0
Os07t0517900-01	Rice	endoplasmic reticulum, extracellular	0.0	0.0
KRH77221	Soybean	golgi	0.0	0.0

Protein Annotations

MapMan:17.7.2.1.24	Gene3D:2.30.170.40	EntrezGene:4337526	ProteinID:AAG03094.2	ProteinID:AAW56888.1	EMBL:AK067481
ProteinID:BAF16293.1	ProteinID:BAS91828.1	ProteinID:EEE61994.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	InterPro:IPR037147	InterPro:L28p-like	HAMAP:MF_00373	EnsemblPlantsGene:Os05g0101400	EnsemblPlants:Os05t0101400-01
PFAM:PF00830	PANTHER:PTHR13528	PANTHER:PTHR13528:SF6	UniProt:Q9FW34	InterPro:Ribo_L28/L24	InterPro:Ribo_L28/L24_sf
InterPro:Ribosomal_L28	SUPFAM:SSF143800	TIGRFAMs:TIGR00009	UniParc:UPI00004BA930	RefSeq:XP_015639509.1	SEG:seg

Description

Similar to 50S ribosomal protein L28, chloroplast precursor. (Os05t0101400-01);Similar to 50S ribosomal protein L28. (Os05t0101400-02)

Coordinates

chr5:-:97385..99788

Molecular Weight (calculated)

14929.3 Da

IEP (calculated)

11.419

GRAVY (calculated)

-0.316

Length

137 amino acids

Sequence
(BLAST)

001: MATMLCSFTP ATRAPLLRTS SSSSSLGFAT SQLAGLSLGL SAAATTAPSA AGPKLHPILA RRICPFTDKK TNRANKVSFS NHKTKKQQFV NLQYKKLWWE
101: EGKRFVKLRL STKALKTIEK HGLDAVAKKA GIDLNKK

Best Arabidopsis Sequence Match ( AT2G33450.1 )
(BLAST)

001: MTTMATQGAW LRMTSSAKSM TKSTVTSKEL GFLTSQLSGL RISYTPSDVI NRISLPSFPG IQPIVARRIC PFTGKKANRA NKVSFSNHKT KKLQFVNLQY
101: KRVWWEAGKR FVKLRLSTKA LKTIEKNGLD AVAKKAGIDL RKK

Arabidopsis Description

RPL28PRPL28 [Source:UniProtKB/TrEMBL;Acc:A0A178VYG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.