Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
18203134
nucleus: 26035336 |
msms PMID:
18203134
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0107400-01 | Rice | cytosol, nucleus | 0.34 | 1.69 |
| Os06t0663400-01 | Rice | cytosol, plasma membrane | 1.37 | 0.93 |
| Os03t0588400-00 | Rice | cytosol | 1.03 | 0.85 |
| Os08t0224100-01 | Rice | cytosol | 1.03 | 0.72 |
| Os02t0174200-01 | Rice | plasma membrane | 1.03 | 0.71 |
| Os04t0608900-01 | Rice | cytosol, plasma membrane | 1.03 | 0.71 |
| Os01t0201200-01 | Rice | nucleus | 1.37 | 0.71 |
| Os01t0747400-01 | Rice | cytosol | 1.37 | 0.63 |
| Os06t0724900-01 | Rice | cytosol, plasma membrane | 1.03 | 0.53 |
| Os02t0120100-01 | Rice | plasma membrane | 1.03 | 0.51 |
| Os06t0636600-01 | Rice | plastid | 0.69 | 0.5 |
| Os05t0519200-02 | Rice | cytosol | 1.03 | 0.5 |
| Os09t0544300-01 | Rice | plasma membrane | 0.69 | 0.33 |
| Os12t0163800-01 | Rice | cytosol | 0.34 | 0.19 |
| Os07t0203925-00 | Rice | cytosol | 0.0 | 0.0 |
| Os07t0475900-01 | Rice | cytosol, plasma membrane | 0.0 | 0.0 |
| Os04t0686650-00 | Rice | cytosol | 0.0 | 0.0 |
| Os03t0816100-01 | Rice | cytosol | 0.0 | 0.0 |
| Os02t0594100-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.2.2.1.5 | EntrezGene:4343215 | EMBL:AK071007 | ProteinID:BAC65931.1 | ProteinID:BAF21537.1 | ProteinID:BAT01448.1 |
| ncoils:Coil | ProteinID:EAZ39779.1 | InterPro:Ebp2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0030687 | GO:GO:0034399 | GO:GO:0042273 | EnsemblPlantsGene:Os07g0475800 |
| EnsemblPlants:Os07t0475800-01 | PFAM:PF05890 | PANTHER:PTHR13028 | UniProt:Q84RU7 | UniParc:UPI000005E6E3 | RefSeq:XP_015644887.1 |
| SEG:seg | : | : | : | : | : |
Description
Eukaryotic rRNA processing family protein. (Os07t0475800-01)
Coordinates
chr7:-:17195348..17196977
Molecular Weight (calculated)
33439.0 Da
IEP (calculated)
9.529
GRAVY (calculated)
-1.453
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MARLAAEDPL VRDEAILDDD DDDVDTDEEE SESEDDSGEE FHAEPSKKAV YNKEGILEKL EDIAWPENVD WRHKLTIEHD QGEKVDVNDD LARELAFYTQ
101: ALDGTRQAFE KLQSMKVRFL RPADYYAEMV KTDAHMHKIK GRLLSEKKKI EEAEERKKAR EAKKRAKEVQ AQKEKERAKQ KKEQIESVKK WRKQRQQGGF
201: AKGNDDGPDL NFEGDEGFKQ SKKKRPGVSP GDRSGGLAKK GKQGKNRKSR DSKFGHGGRK GLKKQNTAET TNDFRGFNQM DKSQNKRRKM G
101: ALDGTRQAFE KLQSMKVRFL RPADYYAEMV KTDAHMHKIK GRLLSEKKKI EEAEERKKAR EAKKRAKEVQ AQKEKERAKQ KKEQIESVKK WRKQRQQGGF
201: AKGNDDGPDL NFEGDEGFKQ SKKKRPGVSP GDRSGGLAKK GKQGKNRKSR DSKFGHGGRK GLKKQNTAET TNDFRGFNQM DKSQNKRRKM G
001: MSLEEDIVSD DEMNMIDEDD ATDSEAESLS DSDTENEITE KLAEPTKTAI YNRDGLLDKL QDISWPEDVD WTHKLTVEID QGGAVDVNDD LARETAFYTQ
101: ALEGTREAFG KLNEMGVNFL RPANYYAEMV KSDVHMEKVK SRLLHEKKQI EESEERRKAR DNKRMAKEVQ SQKMKERAKE KKDNIESVKK WRKQRQQSGF
201: SDKAGEPELD FESGKSFQRG GGKKRPGVSP GDRSGGKGRP TSRMGNKKRE FRDSKFGHGG RKGLSKQNTA ETTNDFKGGF RGGKASGNKR QKR
101: ALEGTREAFG KLNEMGVNFL RPANYYAEMV KSDVHMEKVK SRLLHEKKQI EESEERRKAR DNKRMAKEVQ SQKMKERAKE KKDNIESVKK WRKQRQQSGF
201: SDKAGEPELD FESGKSFQRG GGKKRPGVSP GDRSGGKGRP TSRMGNKKRE FRDSKFGHGG RKGLSKQNTA ETTNDFKGGF RGGKASGNKR QKR
Arabidopsis Description
EBP2Probable rRNA-processing protein EBP2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.