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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24360 Canola cytosol 8.47 14.71
Os03t0588400-00 Rice cytosol 16.95 2.84
Os02t0594100-01 Rice cytosol 13.56 2.27
Os07t0203925-00 Rice cytosol 6.78 1.71
Os05t0519200-02 Rice cytosol 16.95 1.66
Os06t0636600-01 Rice plastid 8.47 1.26
Os01t0747400-01 Rice cytosol 11.86 1.1
Os07t0475900-01 Rice cytosol, plasma membrane 8.47 1.05
Os02t0174200-01 Rice plasma membrane 6.78 0.95
Os01t0201200-01 Rice nucleus 8.47 0.89
Os09t0544300-01 Rice plasma membrane 8.47 0.83
Os12t0163800-01 Rice cytosol 6.78 0.75
Os08t0224100-01 Rice cytosol 5.08 0.72
Os04t0608900-01 Rice cytosol, plasma membrane 5.08 0.71
Os06t0663400-01 Rice cytosol, plasma membrane 5.08 0.7
Os02t0120100-01 Rice plasma membrane 6.78 0.69
Os04t0686650-00 Rice cytosol 5.08 0.65
Os06t0724900-01 Rice cytosol, plasma membrane 3.39 0.35
Os07t0475800-01 Rice nucleus 1.69 0.34
Os03t0816100-01 Rice cytosol 0.0 0.0
HORVU2Hr1G108060.1 Barley cytosol, plastid 0.0 0.0
GSMUA_Achr8P34130_001 Banana cytosol 0.0 0.0
CDY24361 Canola cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Os01t0107400-01EnsemblPlantsGene:Os01g0107400ProteinID:BAH90852.1ProteinID:BAS69981.1SEG:segUniParc:UPI0001B65F2F
UniProt:C7IWH4MapMan:35.2::::
Description
Conserved hypothetical protein. (Os01t0107400-01)
Coordinates
chr1:-:392083..392578
Molecular Weight (calculated)
7176.4 Da
IEP (calculated)
8.559
GRAVY (calculated)
-1.108
Length
59 amino acids
Sequence
(BLAST)
1: LESYIEALEE DPSFLQSYIP PPHPLHHHHH QHHNHHHQQS LLRCFPRYRT TRRSASLRV
Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.