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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • nucleus 2
  • mitochondrion 2
  • cytosol 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os11t0578500-01 Rice nucleus 13.04 2.88
Os11t0573800-00 Rice nucleus 10.14 1.53
Os01t0375100-01 Rice nucleus 10.87 1.49
Os04t0388800-01 Rice nucleus 5.8 1.34
KXG32108 Sorghum cytosol 5.07 1.16
Os03t0401200-01 Rice cytosol 5.8 1.07
Os02t0510000-01 Rice cytosol 5.07 0.95
Os06t0535300-01 Rice nucleus 6.52 0.88
Os06t0111700-01 Rice nucleus 2.9 0.84
Os03t0831000-00 Rice plastid 1.45 0.77
Os01t0923800-01 Rice nucleus 3.62 0.67
Os11t0578100-00 Rice cytosol 5.07 0.66
Os01t0927400-01 Rice cytosol 1.45 0.32
Os11t0574200-00 Rice cytosol 0.72 0.31
Os11t0578250-00 Rice cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Os11t0578225-00EnsemblPlantsGene:Os11g0578225InterPro:DUF3444PANTHER:PTHR10825PANTHER:PTHR10825:SF27PFAM:PF11926
ProteinID:BAT14588.1UniParc:UPI0003938C6FUniProt:A0A0P0Y3U0MapMan:35.2::
Description
Similar to Zinc finger, C3HC4 type family protein. (Os11t0578225-00)
Coordinates
chr11:+:21817647..21818201
Molecular Weight (calculated)
16384.5 Da
IEP (calculated)
8.892
GRAVY (calculated)
-0.651
Length
138 amino acids
Sequence
(BLAST)
001: MKKTGYNANG FNNFTVPRYS STYFAIPNSD FHNFEEGRSC KKFECGQIWA LYSEVDKFPK LYGWIRKVKL QPFTVLLTWL EPCPQQEQEK RWLEQDIPIS
101: CGKFKIRNWK TKYHGNDVFS HLVNTGHIDS NWQIEILP
Best Arabidopsis Sequence Match ( AT5G18730.1 )
(BLAST)
001: MNAQVGVAMG ISQNLEADNN SFLCDSGSAG AVPQKISGCA GLKFNDFDRL REGVKFEAGQ TWAIYNNTVD QMPRLYAQIR KVSAPCFSLR ITYLEPDPDG
101: EKETQWFEED LPVSVGKFRL GENKSTQDRS IFSHVIHCNE RSNTSCFSIT CRFIDTCHFS VSPRKGETWA LFKNWDIKWS SELDSHRKYE YEFVEILSDY
201: ADEAGVYVAY LHKAKGFASV FFRMGTGYEG IFRILPRSLY RFSHRVPSFK LTGDEGNGVA KDAYELDEAA LPETIEEFIM PSNSESETKS EHQAIYFASE
301: GKVFQTGQIW SFHSGYDDLP LYYGRIQKIT FTQAFKQDPV IKLHISRLKA TRFPEDVINW KYGGMPVGCG TFYARKVQEI ITPSEVSHQI MPQTSMDGIE
401: YTILPKIGEV WAIYRYWSRY IDVDRLEFGL YDIVEILDDT LDYKVQLLTQ QPVSDDRNDM EHRLFRACTE YTSNEDDGSE PIFTIPKTER IRFSNKVPAT
501: RVTKEMYGEL EDNSKVEFRA TPINVIHC
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast hits to 17322 proteins in 780 /.../es: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G18730]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.