Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- plastid 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
28232208
|
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0106600-01 | Rice | plastid | 3.48 | 0.73 |
| Os09t0548300-01 | Rice | plastid | 1.74 | 0.35 |
| Os10t0206800-01 | Rice | plasma membrane | 0.87 | 0.19 |
| Os03t0216700-01 | Rice | plasma membrane, vacuole | 0.87 | 0.18 |
| Os01t0919100-01 | Rice | cytosol, peroxisome, plasma membrane | 0.87 | 0.17 |
| Os01t0162101-00 | Rice | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
| Os02t0122200-00 | Rice | plastid, vacuole | 0.0 | 0.0 |
Protein Annotations
| EMBL:AK240887 | EnsemblPlants:Os12t0107500-01 | EnsemblPlantsGene:Os12g0107500 | EntrezGene:4349563 | EntrezGene:4351273 | Gene3D:3.30.429.10 |
| InterPro:IPR014347 | InterPro:Macrophage_inhib_fac | InterPro:Tautomerase/MIF_sf | PANTHER:PTHR11954 | PANTHER:PTHR11954:SF20 | PFAM:PD004816 |
| PFAM:PF01187 | ProteinID:ABG22330.1 | ProteinID:BAT15515.1 | ProteinID:EEE52617.1 | RefSeq:XP_015616911.1 | RefSeq:XP_015619647.1 |
| SUPFAM:SSF55331 | UniParc:UPI0000D89975 | UniProt:B7F8E6 | MapMan:35.2 | : | : |
Description
Similar to Macrophage migration inhibitory factor. (Os12t0107500-01)
Coordinates
chr12:+:411252..413224
Molecular Weight (calculated)
12120.6 Da
IEP (calculated)
8.441
GRAVY (calculated)
0.118
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MPCLNVSTNV NLDGVDTSAV LADASKTVAT IIGKPEAYVM VVLKGSVPMA FGGTQEPAAY GELVSIGGLN PDVNKKLSAG IASILESKLS IPKGRFYLKF
101: YDSKRSDFGW NGTTF
101: YDSKRSDFGW NGTTF
001: MPCLNLSTNV NLDGVDTSSI LSEASSTVAK IIGKPENYVM IVLKGSVPMS FGGTEDPAAY GELVSIGGLN ADVNKKLSAA VSAILETKLS VPKSRFFLKF
101: YDTKGSFFGW NGATL
101: YDTKGSFFGW NGATL
Arabidopsis Description
Tautomerase/MIF superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K9G5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.