Factsheet for PGSC0003DMT400003986

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
peroxisome 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082760.2.1	Tomato	plastid	99.39	99.39
PGSC0003DMT400025653	Potato	peroxisome	86.38	86.38
PGSC0003DMT400075611	Potato	cytosol	75.61	75.61

Protein Annotations

KEGG:00380+1.11.1.6	KEGG:00630+1.11.1.6	MapMan:10.2.1	EntrezGene:102577720	Gene3D:2.40.180.10	ProteinID:AAR14052
ProteinID:AAR14052.2	EMBL:AY442179	InterPro:Catalase	InterPro:Catalase_AS	InterPro:Catalase_clade1/3	InterPro:Catalase_core
InterPro:Catalase_core_sf	InterPro:Catalase_haem_BS	InterPro:Catalase_immune_responsive	InterPro:Catalase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004096	GO:GO:0004601	GO:GO:0005488	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0020037	GO:GO:0042744
GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:IPR018028	InterPro:IPR037060	UniProt:M0ZMN7
PFAM:PF00199	PFAM:PF06628	EnsemblPlantsGene:PGSC0003DMG400001570	PGSC:PGSC0003DMG400001570	EnsemblPlants:PGSC0003DMT400003986	PIRSF:PIRSF038928
PRINTS:PR00067	ScanProsite:PS00437	ScanProsite:PS00438	PFscan:PS51402	PANTHER:PTHR11465	PANTHER:PTHR11465:SF34
SMART:SM01060	SUPFAM:SSF56634	UniParc:UPI000296A5FE	RefSeq:XP_006340832.1	:	:

Description

Catalase isozyme 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400001570]

Coordinates

chr2:-:38567863..38572211

Molecular Weight (calculated)

56938.2 Da

IEP (calculated)

7.217

GRAVY (calculated)

-0.547

Length

492 amino acids

Sequence
(BLAST)

001: MDPYKYRPSS AFNSPFCTTN SGAPVWNNNS SLTVGARGPV LLEDYHLVEK LANFDRERIA ERVVHARGAS AKGFFEVTHD IAHLTCADFL RAPGVQTPVI
101: VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNF PVFFIRDGMK FPDMVHALKP NPKSHIQENW RVLDFFSHHP ESLHMFTFLF DDIGIPQDYR
201: HMDGSGVHTF TLINRAGKST YVKFHWKPTC GVKSLLEEEA IRVGGANHSH ATQDLYDSIA AGNYPEWKLF IQIMDPDHED KFDFDPLDVT KTWPEDILPL
301: QPVGRLVLNK NIDNFFNENE QLAFCPSIVV PGVYYSDDKM LQTRIFSYSD TQRYRLGPNY LQLPANAPKC AHHNNHYDGS MNFMHRDEEI DYFPSRYDQV
401: RHAEVYPIPS TVCSGKREKC IIQKENNFKQ PGERYRTFTP DRQERFIRRW VEALSDPRIT YEIRSIWITY WSQADKSLGQ KLASRLNVRP SI

Best Arabidopsis Sequence Match ( AT4G35090.1 )
(BLAST)

001: MDPYKYRPAS SYNSPFFTTN SGAPVWNNNS SMTVGPRGPI LLEDYHLVEK LANFDRERIP ERVVHARGAS AKGFFEVTHD ISNLTCADFL RAPGVQTPVI
101: VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNF PVFFIRDGMK FPDMVHALKP NPKSHIQENW RILDFFSHHP ESLNMFTFLF DDIGIPQDYR
201: HMDGSGVNTY MLINKAGKAH YVKFHWKPTC GVKSLLEEDA IRVGGTNHSH ATQDLYDSIA AGNYPEWKLF IQIIDPADED KFDFDPLDVT KTWPEDILPL
301: QPVGRMVLNK NIDNFFAENE QLAFCPAIIV PGIHYSDDKL LQTRVFSYAD TQRHRLGPNY LQLPVNAPKC AHHNNHHEGF MNFMHRDEEV NYFPSRYDQV
401: RHAEKYPTPP AVCSGKRERC IIEKENNFKE PGERYRTFTP ERQERFIQRW IDALSDPRIT HEIRSIWISY WSQADKSLGQ KLASRLNVRP SI

Arabidopsis Description

CAT2catalase 2 [Source:TAIR;Acc:AT4G35090]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.