Factsheet for PGSC0003DMT400075611

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062
cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g094620.1.1	Tomato	extracellular, plastid	98.37	98.37
VIT_00s0698g00010.t01	Wine grape	peroxisome	78.25	78.25
VIT_04s0044g00020.t01	Wine grape	peroxisome	78.25	78.25
PGSC0003DMT400025653	Potato	peroxisome	77.64	77.64
PGSC0003DMT400003986	Potato	cytosol	75.61	75.61
Bra012238.1-P	Field mustard	peroxisome	74.59	74.59
CDY29519	Canola	peroxisome	74.59	74.59
CDX96630	Canola	peroxisome	74.59	74.59
Bra025832.1-P	Field mustard	peroxisome	74.59	74.59
Bra016459.1-P	Field mustard	peroxisome	74.59	74.59
CDY31878	Canola	peroxisome	74.39	74.39
CDY33636	Canola	peroxisome	74.39	74.39
GSMUA_Achr3P14360_001	Banana	peroxisome	73.58	73.58
CDY31488	Canola	mitochondrion	74.39	73.2
TraesCS6B01G056800.2	Wheat	cytosol	69.51	69.23
TraesCS6A01G041700.1	Wheat	unclear	69.51	69.23
TraesCS6D01G048300.3	Wheat	golgi, unclear	69.31	69.03
Os02t0115700-01	Rice	plastid	68.7	68.7
Zm00001d054044_P001	Maize	extracellular, mitochondrion, plasma membrane	67.89	67.61
AT1G20620.6	Thale cress	mitochondrion	74.39	66.42
CDY01364	Canola	endoplasmic reticulum, vacuole	74.59	66.01
OQU84207	Sorghum	peroxisome	68.29	65.37
HORVU6Hr1G008640.5	Barley	endoplasmic reticulum, extracellular, mitochondrion	66.06	64.23
HORVU6Hr1G008730.1	Barley	plastid	22.76	62.92
GSMUA_Achr1P17550_001	Banana	cytosol	12.4	54.46

Protein Annotations

KEGG:00380+1.11.1.6	KEGG:00630+1.11.1.6	MapMan:10.2.1	Gene3D:2.40.180.10	ProteinID:AAA80650	ProteinID:AAA80650.1
ProteinID:AAR25790	ProteinID:AAR25790.1	ProteinID:AAR97905	ProteinID:AAR97905.1	ProteinID:ABB72796	ProteinID:ABB72796.1
ProteinID:ABC01913	ProteinID:ABC01913.1	ProteinID:ABY21246	ProteinID:ABY21246.1	ProteinID:AEB22071	ProteinID:AEB22071.1
EMBL:AY450630	EMBL:AY500290	ProteinID:CAA85470	ProteinID:CAA85470.1	InterPro:Catalase	InterPro:Catalase_AS
InterPro:Catalase_clade1/3	InterPro:Catalase_core	InterPro:Catalase_core_sf	InterPro:Catalase_haem_BS	InterPro:Catalase_immune_responsive	InterPro:Catalase_sf
EMBL:DQ268837	EMBL:DQ294281	EMBL:EU294351	GO:GO:0003674	GO:GO:0003824	GO:GO:0004096
GO:GO:0004601	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009514	GO:GO:0009987	GO:GO:0016491	GO:GO:0020037	GO:GO:0042744	GO:GO:0046872
GO:GO:0055114	GO:GO:0098869	InterPro:IPR018028	InterPro:IPR037060	EMBL:JF773567	UniProt:M1CVH4
PFAM:PF00199	PFAM:PF06628	EnsemblPlantsGene:PGSC0003DMG400029408	PGSC:PGSC0003DMG400029408	EnsemblPlants:PGSC0003DMT400075611	PIRSF:PIRSF038928
PRINTS:PR00067	ScanProsite:PS00437	ScanProsite:PS00438	PFscan:PS51402	PANTHER:PTHR11465	PANTHER:PTHR11465:SF34
SMART:SM01060	SUPFAM:SSF56634	EMBL:U27082	UniParc:UPI0002948711	EMBL:Z37106	:

Description

Catalase [Source:PGSC_GENE;Acc:PGSC0003DMG400029408]

Coordinates

chr12:+:57454332..57458059

Molecular Weight (calculated)

56455.6 Da

IEP (calculated)

7.032

GRAVY (calculated)

-0.544

Length

492 amino acids

Sequence
(BLAST)

001: MDPSKYRPSS AYDTPFLTTN AGGPVYNNVS SLTVGPRGPV LLEDYYLIEK LATFDREKIP ERVVHARGAS AKGFFEVTHD ISHLSCADFL RAPGAQTPVI
101: CRFSTVVHER GSPESIRDIR GFAVKFYTRE GNFDLVGNNV PVFFNRDAKS FPDTIRALKP NPKSHIQENW RILDFFSFLP ESLHTFAFFY DDVCLPTDYR
201: HMEGFGVHAY QLINKEGKAH YVKFHWKPTC GVKCMSEEEA IRVGGTNHSH ATKDLYDSIA AGNYPEWKLF IQTMDPEDVD KFDFDPLDVT KTWPEDLLPL
301: IPVGRLVLNR NIDNFFAENE QLAFNPGHIV PGIYYSEDKL LQTRIFAYAD TQRHRIGPNY MQLPVNAPKC GHHNNHRDGA MNMTHRDEEV DYLPSRFDPC
401: RPAEQYPIPA CVLNGRRTNC VIPKENNFKQ AGERYRSWES DRQDRYITKW VESLSDPRVT HEIRSIWISY LSQADKSCGQ KVASRLTVKP TM

Best Arabidopsis Sequence Match ( AT4G35090.1 )
(BLAST)

001: MDPYKYRPAS SYNSPFFTTN SGAPVWNNNS SMTVGPRGPI LLEDYHLVEK LANFDRERIP ERVVHARGAS AKGFFEVTHD ISNLTCADFL RAPGVQTPVI
101: VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNF PVFFIRDGMK FPDMVHALKP NPKSHIQENW RILDFFSHHP ESLNMFTFLF DDIGIPQDYR
201: HMDGSGVNTY MLINKAGKAH YVKFHWKPTC GVKSLLEEDA IRVGGTNHSH ATQDLYDSIA AGNYPEWKLF IQIIDPADED KFDFDPLDVT KTWPEDILPL
301: QPVGRMVLNK NIDNFFAENE QLAFCPAIIV PGIHYSDDKL LQTRVFSYAD TQRHRLGPNY LQLPVNAPKC AHHNNHHEGF MNFMHRDEEV NYFPSRYDQV
401: RHAEKYPTPP AVCSGKRERC IIEKENNFKE PGERYRTFTP ERQERFIQRW IDALSDPRIT HEIRSIWISY WSQADKSLGQ KLASRLNVRP SI

Arabidopsis Description

CAT2catalase 2 [Source:TAIR;Acc:AT4G35090]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.