Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089655 | Potato | cytosol | 49.12 | 73.03 |
| KRG95161 | Soybean | nucleus | 17.26 | 11.96 |
| KRH66847 | Soybean | cytosol | 16.37 | 10.69 |
| PGSC0003DMT400017586 | Potato | nucleus | 17.7 | 6.46 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400091690 | EnsemblPlantsGene:PGSC0003DMG400041261 | PGSC:PGSC0003DMG400041261 | UniParc:UPI000294A68B | UniProt:M1DN69 | MapMan:35.2 |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400041261]
Coordinates
chr11:-:36707391..36710006
Molecular Weight (calculated)
26580.5 Da
IEP (calculated)
4.166
GRAVY (calculated)
-0.326
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSFVICLFD NLELSNPDLY IDEIDWNPKI DSNLLEELEF ALLMKKKGTD LVQVRTLIEE IVPSGWDVDD DVYKNGLTGL IVGDHSKSGE GVWRPVIIPS
101: WEKEFCLKNS SFKSWKNFFR YKENTRFYYE ILNWDDLAGE KAFYDAKNKF YAEFRNLPFD NLELSNPDLY INEIDWNPKI DSNLLEELEF ALLMKKKGTD
201: LVQVRTLIEE IVPSCWDVDD DVYKMV
101: WEKEFCLKNS SFKSWKNFFR YKENTRFYYE ILNWDDLAGE KAFYDAKNKF YAEFRNLPFD NLELSNPDLY INEIDWNPKI DSNLLEELEF ALLMKKKGTD
201: LVQVRTLIEE IVPSCWDVDD DVYKMV
001: MSNWRRQKPR NNNSNNYSRQ RGTTMTQSSS KPPLANCKIS VPAWEKDFCA VIGSVPWWKV VEAKRFMHIY DRVVQWDDSA GEDAFKNAKS RFWAEINGLT
101: CDLSLPDPDV YIDDVDWDAE VDNELILDLE RGPDPLTEEQ EHVVILDALV LSGQYGGLGW GTGWGDAEGI NEENVGKGKP ENSWGDQKYD GWNEDSWGIK
201: EKTETWDHNN NNTNTDSWDH NNNFKAETWD QKNCNNNSFN YKKVENWNGR DQGRENRGWR KRGEGRHGGE RVEDCRWRNG RGRSRGGFQQ HSANAWGWTE
301: SF
101: CDLSLPDPDV YIDDVDWDAE VDNELILDLE RGPDPLTEEQ EHVVILDALV LSGQYGGLGW GTGWGDAEGI NEENVGKGKP ENSWGDQKYD GWNEDSWGIK
201: EKTETWDHNN NNTNTDSWDH NNNFKAETWD QKNCNNNSFN YKKVENWNGR DQGRENRGWR KRGEGRHGGE RVEDCRWRNG RGRSRGGFQQ HSANAWGWTE
301: SF
Arabidopsis Description
FK506-binding-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XY4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.