Factsheet for PGSC0003DMT400017586

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g068170.2.1	Tomato	nucleus	46.69	68.48
Os11t0140900-01	Rice	nucleus	11.63	26.28
PGSC0003DMT400089655	Potato	cytosol	6.14	25.0
KXG22825	Sorghum	mitochondrion, nucleus	12.6	24.76
Os01t0801200-01	Rice	nucleus	13.57	24.63
HORVU5Hr1G043530.1	Barley	nucleus	11.79	24.33
TraesCS5D01G142200.1	Wheat	nucleus	11.63	24.08
GSMUA_AchrUn_...	Banana	nucleus	13.73	23.94
TraesCS3B01G360400.1	Wheat	nucleus	13.57	23.86
TraesCS3D01G323800.1	Wheat	nucleus	13.57	23.8
TraesCS5A01G135600.1	Wheat	nucleus	11.47	23.75
TraesCS3A01G330400.1	Wheat	nucleus	13.41	23.65
TraesCS5B01G134500.1	Wheat	nucleus	11.47	23.51
OQU82840	Sorghum	nucleus	10.34	22.7
KRH62921	Soybean	nucleus	12.92	22.54
Os12t0137400-00	Rice	endoplasmic reticulum, nucleus	10.99	22.15
EES03760	Sorghum	nucleus	11.79	21.47
KRH29960	Soybean	nucleus	11.95	20.39
VIT_08s0007g05940.t01	Wine grape	nucleus	12.76	19.9
KXG22824	Sorghum	nucleus	8.89	19.64
KXG22823	Sorghum	nucleus	13.73	18.97
CDX78048	Canola	mitochondrion, nucleus	12.6	18.53
PGSC0003DMT400091690	Potato	cytosol	6.46	17.7
CDX73674	Canola	mitochondrion, nucleus	11.79	17.51
AT3G51940.2	Thale cress	mitochondrion, nucleus	12.28	16.63
Bra006884.1-P	Field mustard	plastid	12.6	12.79
Zm00001d044509_P001	Maize	nucleus	4.04	10.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400017586	EnsemblPlantsGene:PGSC0003DMG400006821	EntrezGene:102592317	PANTHER:PTHR34567	PANTHER:PTHR34567:SF3	PGSC:PGSC0003DMG400006821
RefSeq:XP_006345375.1	SEG:seg	UniParc:UPI0002962180	UniProt:M1A951	MapMan:35.2	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006821]

Coordinates

chr1:-:64360714..64368078

Molecular Weight (calculated)

68844.7 Da

IEP (calculated)

4.969

GRAVY (calculated)

-1.297

Length

619 amino acids

Sequence
(BLAST)

001: MGNWNRRRWI PRKNYKQEDF PPSQPYHYNQ SPYHAIQQNS VPLWEIDFCR AAGIPWHKVV SAKTYMYCYE NVVKWDDSAG QEAFNDAKRR YWAEIRGLPP
101: QNPPPNPDLY IDKVDWDSAI DPELILDLDR EYFNPNEVKN SVKSENNLVP GCTLVWEDKN ADNGENHWGS GNVQGSKTAA NGENPWESGN VQGSKTAANG
201: ENPWESGNVQ GSKTAANGEN PWESGNVQGS KTAANGENPW ESGNVQGSKT AANGENPWES GNVQGSKTAA NGENPWESGN VQGSKTAANG ENPWESGNVQ
301: GSKTAANGEN PWESGNVQGS KTAANGENPW ESGNVQGSKT AANGENPWES GNVQGSKTAA NGENPWESGN VQGSKTAANG ENPWESGNVQ GSKPGDNREN
401: PWESASIEDT KQTWNEWYTP VNIKDDNPWE RSSPKTQGIL KDTAWGGCGN ESWGWNTGMN YENGYACVDN SFSNLWHQSG ACVSGAKGNE WVDNSVGSWG
501: QTYWNTGGHE QRNSDYGSRW NRNLSRGGGT TSKDRRWRGS EVTSWDYQQQ PRQSNERNVD FGRPSRGDKT FYTGSRKRES SSQHVPRYKS SRFQSDEQRT
601: ATNWREEKTQ KRVTFNMYD

Best Arabidopsis Sequence Match ( AT5G03990.1 )
(BLAST)

001: MSNWRRQKPR NNNSNNYSRQ RGTTMTQSSS KPPLANCKIS VPAWEKDFCA VIGSVPWWKV VEAKRFMHIY DRVVQWDDSA GEDAFKNAKS RFWAEINGLT
101: CDLSLPDPDV YIDDVDWDAE VDNELILDLE RGPDPLTEEQ EHVVILDALV LSGQYGGLGW GTGWGDAEGI NEENVGKGKP ENSWGDQKYD GWNEDSWGIK
201: EKTETWDHNN NNTNTDSWDH NNNFKAETWD QKNCNNNSFN YKKVENWNGR DQGRENRGWR KRGEGRHGGE RVEDCRWRNG RGRSRGGFQQ HSANAWGWTE
301: SF

Arabidopsis Description

FK506-binding-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.