Factsheet for VIT_08s0007g05940.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G135600.1	Wheat	nucleus	23.43	31.1
TraesCS5D01G142200.1	Wheat	nucleus	22.42	29.77
HORVU5Hr1G043530.1	Barley	nucleus	21.91	29.0
TraesCS5B01G134500.1	Wheat	nucleus	21.91	28.81
Os11t0140900-01	Rice	nucleus	19.65	28.47
OQU82840	Sorghum	nucleus	19.9	28.01
KXG22825	Sorghum	mitochondrion, nucleus	20.65	26.03
Os12t0137400-00	Rice	endoplasmic reticulum, nucleus	19.9	25.73
TraesCS3B01G360400.1	Wheat	nucleus	21.91	24.72
Os01t0801200-01	Rice	nucleus	20.65	24.05
EES03760	Sorghum	nucleus	20.4	23.82
TraesCS3D01G323800.1	Wheat	nucleus	21.16	23.8
TraesCS3A01G330400.1	Wheat	nucleus	20.91	23.65
KRH62921	Soybean	nucleus	19.65	21.97
GSMUA_AchrUn_...	Banana	nucleus	19.14	21.41
KRH29960	Soybean	nucleus	19.4	21.21
KXG22824	Sorghum	nucleus	13.85	19.64
Solyc01g068170.2.1	Tomato	nucleus	19.4	18.25
CDX78048	Canola	mitochondrion, nucleus	18.64	17.58
CDX73674	Canola	mitochondrion, nucleus	18.39	17.51
KXG22823	Sorghum	nucleus	19.65	17.41
AT3G51940.2	Thale cress	mitochondrion, nucleus	19.14	16.63
PGSC0003DMT400017586	Potato	nucleus	19.9	12.76
Bra006884.1-P	Field mustard	plastid	18.64	12.13
Zm00001d044509_P001	Maize	nucleus	6.3	10.68

Protein Annotations

ArrayExpress:VIT_08s0007g05940	EMBL:FN595991	EnsemblPlants:VIT_08s0007g05940.t01	EnsemblPlantsGene:VIT_08s0007g05940	EntrezGene:100241733	EntrezGene:LOC100241733
PANTHER:PTHR34567	PANTHER:PTHR34567:SF2	ProteinID:CCB55283	ProteinID:CCB55283.1	RefSeq:XP_002274792	RefSeq:XP_002274792.2
RefSeq:XP_010653923.1	SEG:seg	UniParc:UPI0002108AFD	UniProt:F6HLM7	wikigene:100241733	wikigene:LOC100241733
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:19830580..19833603

Molecular Weight (calculated)

44645.8 Da

IEP (calculated)

5.087

GRAVY (calculated)

-0.982

Length

397 amino acids

Sequence
(BLAST)

001: MGGRRRQGDY HHQESQKTRS LNRKPPLGNW QPTVPSWEKK FCSSVGSFSW QRLLENKRFI YLYDNVLQWN DSAGEEAFHN AKNRFWAQIN GLPCDISLPD
101: PDIYIDEIDW NCSIDPEMIL DLEREPVDPD DCVKSEKVSS LGNSLLLLNQ SFSCTGWGDA EEDIGKAADI PSGPGLWHHN QNVDNPWELS CTQNKGAVKA
201: TGWGDSEEPV EATGWGDCGE PVEATGWGNT NEPVKATGWG NSNEPVKATG WGDWDHQPVE ATGWGDYYGA MEVPIWKDGW NNSSGWNQYE NKYNDLENLK
301: DRRAGGVWGT GNGNSRGEEV GYMSRYRSSR FHDNEYQADR GWRSGGRKRA NFLFDEGSFL DKKAASQPRN TIHHCGPVSH HGSGKAGNSW SWKKPVS

Best Arabidopsis Sequence Match ( AT5G03990.1 )
(BLAST)

001: MSNWRRQKPR NNNSNNYSRQ RGTTMTQSSS KPPLANCKIS VPAWEKDFCA VIGSVPWWKV VEAKRFMHIY DRVVQWDDSA GEDAFKNAKS RFWAEINGLT
101: CDLSLPDPDV YIDDVDWDAE VDNELILDLE RGPDPLTEEQ EHVVILDALV LSGQYGGLGW GTGWGDAEGI NEENVGKGKP ENSWGDQKYD GWNEDSWGIK
201: EKTETWDHNN NNTNTDSWDH NNNFKAETWD QKNCNNNSFN YKKVENWNGR DQGRENRGWR KRGEGRHGGE RVEDCRWRNG RGRSRGGFQQ HSANAWGWTE
301: SF

Arabidopsis Description

FK506-binding-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.