Factsheet for Solyc01g066720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029479	Potato	cytosol	98.97	98.97
VIT_05s0077g02320.t01	Wine grape	cytosol	80.41	80.41
Solyc01g099820.2.1	Tomato	cytosol	60.82	59.0
Solyc06g050870.2.1	Tomato	plastid	35.05	45.95

Protein Annotations

MapMan:35.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031305
GO:GO:0033617	GO:GO:0097249	InterPro:Hypoxia_induced_domain	InterPro:IPR007667	UniProt:K4AWS3	PFAM:PF04588
PFscan:PS51503	PANTHER:PTHR28018	PANTHER:PTHR28018:SF1	EnsemblPlantsGene:Solyc01g066720.2	EnsemblPlants:Solyc01g066720.2.1	UniParc:UPI0002762B64
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:74874160..74876517

Molecular Weight (calculated)

10720.9 Da

IEP (calculated)

9.938

GRAVY (calculated)

-0.184

Length

97 amino acids

Sequence
(BLAST)

1: MAENNSMESV RKWVVEHKLR TVGCLWLSGI AGSIAYNWSQ PHMKTSVKII HARLHAQALT LAALAGAAVV EYYDHSSGAK AERVAKFLQP QAHSHKE

Best Arabidopsis Sequence Match ( AT3G05550.1 )
(BLAST)

1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD

Arabidopsis Description

F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.