Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | VIT_18s0072g01030.t01 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029479 | Potato | cytosol | 81.44 | 81.44 |
| Solyc01g066720.2.1 | Tomato | cytosol, plastid | 80.41 | 80.41 |
| Bra009944.1-P | Field mustard | cytosol | 71.13 | 71.88 |
| CDX80621 | Canola | cytosol | 71.13 | 71.88 |
| CDX86141 | Canola | cytosol | 71.13 | 71.88 |
| CDY25023 | Canola | cytosol | 71.13 | 71.88 |
| VIT_14s0060g02300.t01 | Wine grape | plastid | 67.01 | 71.43 |
| AT3G05550.1 | Thale cress | cytosol | 71.13 | 71.13 |
| AT5G27760.1 | Thale cress | cytosol | 70.1 | 70.83 |
| Bra020576.1-P | Field mustard | cytosol | 70.1 | 70.83 |
| CDY05562 | Canola | cytosol | 70.1 | 70.83 |
| VIT_13s0067g02300.t01 | Wine grape | plastid | 36.08 | 44.3 |
Protein Annotations
| EntrezGene:100243044 | wikigene:100243044 | MapMan:35.2 | UniProt:A5BP48 | EMBL:AM466237 | ProteinID:CAN65865 |
| ProteinID:CAN65865.1 | ProteinID:CBI22999 | ProteinID:CBI22999.3 | EMBL:FN595246 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031305 | GO:GO:0033617 | GO:GO:0097249 | InterPro:Hypoxia_induced_domain |
| InterPro:IPR007667 | EntrezGene:LOC100243044 | wikigene:LOC100243044 | PFAM:PF04588 | PFscan:PS51503 | PANTHER:PTHR28018 |
| PANTHER:PTHR28018:SF1 | TIGR:TC59953 | TMHMM:TMhelix | UniParc:UPI0001521665 | ArrayExpress:VIT_05s0077g02320 | EnsemblPlantsGene:VIT_05s0077g02320 |
| EnsemblPlants:VIT_05s0077g02320.t01 | unigene:Vvi.11231 | RefSeq:XP_002268696 | RefSeq:XP_002268696.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr5:-:1840343..1843794
Molecular Weight (calculated)
10738.0 Da
IEP (calculated)
9.810
GRAVY (calculated)
-0.085
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MAETNTLASI RKWIVEHKLR SVGCLWLSGI AGSIAYNWSQ PNMKTSVKII HARLHAQALT LAALAGAAVV EYYDHKSGIK ADRYAKFLDM DTPAHKD
1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD
Arabidopsis Description
F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.