Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- peroxisome 1
- nucleus 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009944.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX80621 | Canola | cytosol | 98.96 | 98.96 |
| CDY25023 | Canola | cytosol | 97.92 | 97.92 |
| CDY05562 | Canola | cytosol | 96.88 | 96.88 |
| AT5G27760.1 | Thale cress | cytosol | 92.71 | 92.71 |
| KRG92905 | Soybean | cytosol | 68.75 | 79.52 |
| VIT_05s0077g02320.t01 | Wine grape | cytosol | 71.88 | 71.13 |
| GSMUA_Achr3P24030_001 | Banana | cytosol | 67.71 | 66.33 |
| PGSC0003DMT400063585 | Potato | cytosol | 68.75 | 66.0 |
| GSMUA_Achr7P03750_001 | Banana | cytosol | 59.38 | 65.52 |
| KRH33884 | Soybean | cytosol | 46.88 | 65.22 |
| Solyc01g099820.2.1 | Tomato | cytosol | 67.71 | 65.0 |
| GSMUA_Achr8P22530_001 | Banana | cytosol | 67.71 | 64.36 |
| Zm00001d050935_P001 | Maize | cytosol | 62.5 | 60.61 |
| TraesCS2D01G438000.1 | Wheat | cytosol | 59.38 | 57.58 |
| TraesCS2A01G440800.1 | Wheat | cytosol, mitochondrion, plastid | 59.38 | 57.58 |
| TraesCS2B01G460200.1 | Wheat | cytosol | 57.29 | 55.56 |
| Os02t0592400-01 | Rice | cytosol | 61.46 | 55.14 |
| KRH73222 | Soybean | mitochondrion, plastid | 41.67 | 54.79 |
| HORVU7Hr1G087030.1 | Barley | extracellular | 33.33 | 54.24 |
| EES05347 | Sorghum | cytosol | 61.46 | 54.13 |
| Zm00001d017060_P001 | Maize | cytosol | 62.5 | 54.05 |
| GSMUA_AchrUn_... | Banana | plastid | 40.62 | 43.82 |
| KRH31217 | Soybean | plastid | 39.58 | 38.0 |
| GSMUA_Achr5P29560_001 | Banana | plastid | 34.38 | 37.5 |
| HORVU2Hr1G102130.5 | Barley | cytosol | 45.83 | 36.67 |
| KRG97658 | Soybean | plastid | 36.46 | 35.0 |
| Os11t0112000-01 | Rice | mitochondrion | 31.25 | 33.33 |
| Os12t0111600-01 | Rice | nucleus | 36.46 | 33.33 |
| Zm00001d052333_P001 | Maize | cytosol | 35.42 | 31.19 |
| EES09115 | Sorghum | nucleus, plastid | 35.42 | 31.19 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 31.25 | 26.79 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 23.96 | 23.96 |
| TraesCS5B01G147500.1 | Wheat | cytosol | 22.92 | 22.92 |
| TraesCS5A01G148900.1 | Wheat | cytosol | 22.92 | 22.92 |
| TraesCS5D01G143900.1 | Wheat | cytosol | 21.88 | 21.88 |
Protein Annotations
| EnsemblPlants:CDX86141 | EnsemblPlantsGene:GSBRNA2T00144197001 | GO:A0A078DA49 | InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | PANTHER:PTHR28018 |
| PANTHER:PTHR28018:SF1 | PFAM:PF04588 | PFscan:PS51503 | ProteinID:CDX86141 | ProteinID:CDX86141.1 | SEG:seg |
| unigene:Bna.3380 | UniParc:UPI000253F4A5 | MapMan:35.2 | : | : | : |
Description
BnaA06g28580D
Coordinates
chrLK031845:-:23967..25256
Molecular Weight (calculated)
10682.9 Da
IEP (calculated)
10.011
GRAVY (calculated)
-0.231
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MAESKTKIAE IREWIVEHKL RTVGCLWLSG ISGSIAYNWS KPGMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKTGA TDRYPKFLKP DNLTKD
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD
Arabidopsis Description
Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.