Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | KRG91803 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | KRH34983 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | KRH34984 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31217 | Soybean | plastid | 74.0 | 74.0 |
| KRH73222 | Soybean | mitochondrion, plastid | 54.0 | 73.97 |
| VIT_13s0067g02300.t01 | Wine grape | plastid | 54.0 | 68.35 |
| Solyc06g050870.2.1 | Tomato | plastid | 50.0 | 67.57 |
| GSMUA_AchrUn_... | Banana | plastid | 49.0 | 55.06 |
| GSMUA_Achr5P29560_001 | Banana | plastid | 45.0 | 51.14 |
| PGSC0003DMT400071904 | Potato | cytosol | 37.0 | 46.25 |
| Os12t0111600-01 | Rice | nucleus | 46.0 | 43.81 |
| Zm00001d052333_P001 | Maize | cytosol | 46.0 | 42.2 |
| EES09115 | Sorghum | nucleus, plastid | 45.0 | 41.28 |
| Os11t0112000-01 | Rice | mitochondrion | 36.0 | 40.0 |
| KRG92905 | Soybean | cytosol | 33.0 | 39.76 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 44.0 | 39.29 |
| AT3G05550.1 | Thale cress | cytosol | 37.0 | 38.14 |
| CDX80621 | Canola | cytosol | 36.0 | 37.5 |
| CDX86141 | Canola | cytosol | 35.0 | 36.46 |
| CDY05562 | Canola | cytosol | 35.0 | 36.46 |
| Bra020576.1-P | Field mustard | cytosol | 35.0 | 36.46 |
| Bra009944.1-P | Field mustard | cytosol | 35.0 | 36.46 |
| AT5G27760.1 | Thale cress | cytosol | 35.0 | 36.46 |
| CDY25023 | Canola | cytosol | 35.0 | 36.46 |
| KRH33884 | Soybean | cytosol | 24.0 | 34.78 |
| TraesCS5B01G147500.1 | Wheat | cytosol | 28.0 | 29.17 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 28.0 | 29.17 |
| TraesCS5D01G143900.1 | Wheat | cytosol | 27.0 | 28.12 |
| TraesCS5A01G148900.1 | Wheat | cytosol | 26.0 | 27.08 |
Protein Annotations
| EntrezGene:100809814 | MapMan:35.2 | EMBL:ACUP02010805 | EnsemblPlantsGene:GLYMA_18G022000 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031305 | GO:GO:0033617 | GO:GO:0097249 | InterPro:Hypoxia_induced_domain |
| UniProt:I1MYX3 | InterPro:IPR007667 | EnsemblPlants:KRG97658 | ProteinID:KRG97658 | ProteinID:KRG97658.1 | PFAM:PF04588 |
| PFscan:PS51503 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF3 | TMHMM:TMhelix | UniParc:UPI000233EE3B | : |
Description
hypothetical protein
Coordinates
chr18:+:1613172..1614273
Molecular Weight (calculated)
11045.5 Da
IEP (calculated)
9.486
GRAVY (calculated)
0.050
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: METVQSWVSK HKLASIGALW ASGIGATLVA YSCKKSPMKP SLRLIHARMH AQALTLAVLS GAAVYHFYEK RDVQPKPVAD YTIPAPNVTQ MVEYELQCPF
1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD
Arabidopsis Description
F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.