Factsheet for Zm00001d036839_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27760.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT5G27760.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT5G27760.1	Zm00001d053016_P002	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09115	Sorghum	nucleus, plastid	70.54	72.48
Zm00001d052333_P001	Maize	cytosol	67.86	69.72
Os12t0111600-01	Rice	nucleus	65.18	69.52
Os11t0112000-01	Rice	mitochondrion	53.57	66.67
Solyc06g050870.2.1	Tomato	plastid	38.39	58.11
VIT_13s0067g02300.t01	Wine grape	plastid	39.29	55.7
KRH73222	Soybean	mitochondrion, plastid	35.71	54.79
TraesCS5D01G143900.1	Wheat	cytosol	46.43	54.17
HORVU5Hr1G047000.1	Barley	cytosol, plastid	45.54	53.12
GSMUA_AchrUn_...	Banana	plastid	41.07	51.69
TraesCS5B01G147500.1	Wheat	cytosol	43.75	51.04
TraesCS5A01G148900.1	Wheat	cytosol	42.86	50.0
GSMUA_Achr5P29560_001	Banana	plastid	38.39	48.86
PGSC0003DMT400071904	Potato	cytosol	33.04	46.25
KRH31217	Soybean	plastid	41.07	46.0
KRG97658	Soybean	plastid	39.29	44.0
Zm00001d050935_P001	Maize	cytosol	28.57	32.32
CDY05562	Canola	cytosol	26.79	31.25
CDX86141	Canola	cytosol	26.79	31.25
CDX80621	Canola	cytosol	26.79	31.25
Bra020576.1-P	Field mustard	cytosol	26.79	31.25
Bra009944.1-P	Field mustard	cytosol	26.79	31.25
AT3G05550.1	Thale cress	cytosol	26.79	30.93
CDY25023	Canola	cytosol	25.89	30.21
AT5G27760.1	Thale cress	cytosol	25.89	30.21
Zm00001d007153_P001	Maize	mitochondrion	26.79	29.41
Zm00001d017060_P001	Maize	cytosol	27.68	27.93

Protein Annotations

EMBL:BT040829	EMBL:EU952252	EnsemblPlants:Zm00001d036839_P001	EnsemblPlants:Zm00001d036839_T001	EnsemblPlantsGene:Zm00001d036839	EntrezGene:100273332
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Hypoxia_induced_domain	InterPro:IPR007667	PANTHER:PTHR28018
PANTHER:PTHR28018:SF3	PFAM:PF04588	PFscan:PS51503	ProteinID:AQK82271.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00017B7BD0	UniProt:B4FUP1	MapMan:35.2	:	:	:

Description

Hypoxia-responsive family protein

Coordinates

chr6:+:103351537..103352681

Molecular Weight (calculated)

12284.4 Da

IEP (calculated)

8.962

GRAVY (calculated)

-0.401

Length

112 amino acids

Sequence
(BLAST)

001: MESTVERISS SVQSWVKDHE LAAIGGVWAA AVGTSVAYSR RKAPQRGTGL RLIHARMHAQ ALTLAVLGGA ALFHYYGDGG RRKRADDIDL DFYSQLPPAT
101: DADGNENQRW SW

Best Arabidopsis Sequence Match ( AT3G05550.1 )
(BLAST)

1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD

Arabidopsis Description

F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.