Factsheet for Zm00001d007153_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97717	Sorghum	cytosol	87.25	84.76
TraesCS2A01G111000.1	Wheat	cytosol	79.41	78.64
TraesCS2D01G111700.1	Wheat	cytosol	79.41	78.64
Os07t0673900-01	Rice	cytosol	77.45	78.22
TraesCS2B01G130000.1	Wheat	cytosol	78.43	77.67
Zm00001d050935_P001	Maize	cytosol	57.84	59.6
Zm00001d017060_P001	Maize	cytosol	56.86	52.25
HORVU2Hr1G019250.3	Barley	cytosol	46.08	31.54
Zm00001d052333_P001	Maize	cytosol	32.35	30.28
Zm00001d036839_P001	Maize	cytosol, nucleus, plastid	29.41	26.79

Protein Annotations

EMBL:BT036576	EnsemblPlants:Zm00001d007153_P001	EnsemblPlants:Zm00001d007153_T001	EnsemblPlantsGene:Zm00001d007153	EntrezGene:100194124	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:Hypoxia_induced_domain	InterPro:IPR007667	PANTHER:PTHR28018	PANTHER:PTHR28018:SF1
PFAM:PF04588	PFscan:PS51503	ProteinID:ONM26157.1	SEG:seg	UniParc:UPI00017B7071	UniProt:B4FHI8
MapMan:35.2	:	:	:	:	:

Description

Hypoxia-responsive family protein

Coordinates

chr2:+:223379334..223381670

Molecular Weight (calculated)

11123.2 Da

IEP (calculated)

10.068

GRAVY (calculated)

-0.296

Length

102 amino acids

Sequence
(BLAST)

001: MAEKGALQSA REWVVDHKLR AVGTLWLSGI VGSIAYNWSR PGMKTSVKII HARLHAQALT LAALAGSALV EYYDHQQGSG SKVHQYAKQF LSSDSNSGQQ
101: KE

Best Arabidopsis Sequence Match ( AT5G27760.1 )
(BLAST)

1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD

Arabidopsis Description

Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.