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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • peroxisome 1
  • plasma membrane 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d007153_P001 Maize mitochondrion 84.76 87.25
TraesCS2A01G111000.1 Wheat cytosol 77.14 78.64
TraesCS2D01G111700.1 Wheat cytosol 77.14 78.64
TraesCS2B01G130000.1 Wheat cytosol 76.19 77.67
Os07t0673900-01 Rice cytosol 74.29 77.23
EES05347 Sorghum cytosol 57.14 55.05
HORVU2Hr1G019250.3 Barley cytosol 47.62 33.56
EES09115 Sorghum nucleus, plastid 31.43 30.28
Protein Annotations
MapMan:35.2EntrezGene:8078540UniProt:C5X5I5EnsemblPlants:EER97717ProteinID:EER97717ProteinID:EER97717.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0008150
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0031305GO:GO:0033617
GO:GO:0097249InterPro:Hypoxia_induced_domainInterPro:IPR007667PFAM:PF04588PFscan:PS51503PANTHER:PTHR28018
PANTHER:PTHR28018:SF1EnsemblPlantsGene:SORBI_3002G414600unigene:Sbi.10675UniParc:UPI0001A83579RefSeq:XP_002461196.1SEG:seg
Description
hypothetical protein
Coordinates
chr2:+:76185936..76189173
Molecular Weight (calculated)
11440.5 Da
IEP (calculated)
9.490
GRAVY (calculated)
-0.329
Length
105 amino acids
Sequence
(BLAST)
001: MAEEKSALQS AREWVVEHKL RAVGTLWLSG IVGSIAYNWS RPGMKTSVKL IHARLHAQAL TLAALAGSGL VEYYDHQQGS GSKVHQYAKQ FLSSDADSSS
101: SPQKE
Best Arabidopsis Sequence Match ( AT5G27760.1 )
(BLAST)
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD
Arabidopsis Description
Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.