Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | EES09373 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | EES16732 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050935_P001 | Maize | cytosol | 85.32 | 93.94 |
| Zm00001d017060_P001 | Maize | cytosol | 93.58 | 91.89 |
| Os02t0592400-01 | Rice | cytosol | 86.24 | 87.85 |
| TraesCS2D01G438000.1 | Wheat | cytosol | 74.31 | 81.82 |
| TraesCS2A01G440800.1 | Wheat | cytosol, mitochondrion, plastid | 73.39 | 80.81 |
| TraesCS2B01G460200.1 | Wheat | cytosol | 72.48 | 79.8 |
| KRG92905 | Soybean | cytosol | 55.96 | 73.49 |
| GSMUA_Achr7P03750_001 | Banana | cytosol | 55.05 | 68.97 |
| KRH33884 | Soybean | cytosol | 41.28 | 65.22 |
| GSMUA_Achr8P22530_001 | Banana | cytosol | 59.63 | 64.36 |
| GSMUA_Achr3P24030_001 | Banana | cytosol | 57.8 | 64.29 |
| VIT_14s0060g02300.t01 | Wine grape | plastid | 53.21 | 63.74 |
| CDY05562 | Canola | cytosol | 54.13 | 61.46 |
| CDX86141 | Canola | cytosol | 54.13 | 61.46 |
| Bra020576.1-P | Field mustard | cytosol | 54.13 | 61.46 |
| Bra009944.1-P | Field mustard | cytosol | 54.13 | 61.46 |
| AT3G05550.1 | Thale cress | cytosol | 54.13 | 60.82 |
| CDY25023 | Canola | cytosol | 53.21 | 60.42 |
| CDX80621 | Canola | cytosol | 53.21 | 60.42 |
| AT5G27760.1 | Thale cress | cytosol | 52.29 | 59.38 |
| HORVU7Hr1G087030.1 | Barley | extracellular | 31.19 | 57.63 |
| EER97717 | Sorghum | cytosol | 55.05 | 57.14 |
| HORVU2Hr1G102130.5 | Barley | cytosol | 59.63 | 54.17 |
| EES09115 | Sorghum | nucleus, plastid | 29.36 | 29.36 |
Protein Annotations
| MapMan:35.2 | EntrezGene:8055442 | UniProt:C5XWG4 | EnsemblPlants:EES05347 | ProteinID:EES05347 | ProteinID:EES05347.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031305 | GO:GO:0033617 |
| GO:GO:0097249 | InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | PFAM:PF04588 | PFscan:PS51503 | PANTHER:PTHR28018 |
| PANTHER:PTHR28018:SF2 | EnsemblPlantsGene:SORBI_3004G199300 | unigene:Sbi.9410 | UniParc:UPI0001A851E3 | RefSeq:XP_002452371.1 | : |
Description
hypothetical protein
Coordinates
chr4:+:55038406..55041601
Molecular Weight (calculated)
11995.4 Da
IEP (calculated)
9.826
GRAVY (calculated)
-0.375
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEAEGKAKQ MAEGPSKIES MRKWVVDHKL RAVGCLWLGG ISSSIAYNWS RPNMKTSVKI IHARLHAQGL TLAALVGSAC VEYYDNKYGS SGPKVDKYTS
101: QYLAHAHKD
101: QYLAHAHKD
1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD
Arabidopsis Description
F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.