Factsheet for GSMUA_Achr3P24030_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27760.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT5G27760.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT5G27760.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT5G27760.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92905	Soybean	cytosol	64.29	75.9
GSMUA_Achr7P03750_001	Banana	cytosol	67.35	75.86
GSMUA_Achr8P22530_001	Banana	cytosol	74.49	72.28
VIT_14s0060g02300.t01	Wine grape	plastid	65.31	70.33
Bra009944.1-P	Field mustard	cytosol	66.33	67.71
CDX86141	Canola	cytosol	66.33	67.71
CDX80621	Canola	cytosol	65.31	66.67
CDY25023	Canola	cytosol	65.31	66.67
Bra020576.1-P	Field mustard	cytosol	64.29	65.62
CDY05562	Canola	cytosol	64.29	65.62
AT3G05550.1	Thale cress	cytosol	64.29	64.95
Zm00001d050935_P001	Maize	cytosol	65.31	64.65
TraesCS2D01G438000.1	Wheat	cytosol	65.31	64.65
AT5G27760.1	Thale cress	cytosol	63.27	64.58
KRH33884	Soybean	cytosol	44.9	63.77
TraesCS2A01G440800.1	Wheat	cytosol, mitochondrion, plastid	64.29	63.64
TraesCS2B01G460200.1	Wheat	cytosol	64.29	63.64
Zm00001d017060_P001	Maize	cytosol	67.35	59.46
Os02t0592400-01	Rice	cytosol	63.27	57.94
EES05347	Sorghum	cytosol	64.29	57.8
HORVU7Hr1G087030.1	Barley	extracellular	34.69	57.63
GSMUA_Achr5P29560_001	Banana	plastid	37.76	42.05
GSMUA_AchrUn_...	Banana	plastid	36.73	40.45
HORVU2Hr1G102130.5	Barley	cytosol	46.94	38.33

Protein Annotations

EnsemblPlants:GSMUA_Achr3P24030_001	EnsemblPlants:GSMUA_Achr3T24030_001	EnsemblPlantsGene:GSMUA_Achr3G24030_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Hypoxia_induced_domain	InterPro:IPR007667	PANTHER:PTHR28018	PANTHER:PTHR28018:SF1	PFAM:PF04588	PFscan:PS51503
SEG:seg	UniParc:UPI000295B392	UniProt:M0SHB9	MapMan:35.2	:	:

Description

hypoxia-responsive family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G24030_001]

Coordinates

chr3:+:24703293..24705918

Molecular Weight (calculated)

10892.1 Da

IEP (calculated)

9.835

GRAVY (calculated)

-0.197

Length

98 amino acids

Sequence
(BLAST)

1: MAESPSSIES IRKWIVEHKL RAVGCLWLSG IGSSIAYNWS RHNMKPSVKI IHARLHAQAL TLAALAGAAL VEYYDHQSKP GSNVVKYPDQ FLAHPQKD

Best Arabidopsis Sequence Match ( AT3G05550.1 )
(BLAST)

1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD

Arabidopsis Description

F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.