Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- peroxisome 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | KRG91803 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | KRH34983 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | KRH34984 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33884 | Soybean | cytosol | 63.86 | 76.81 |
| AT3G05550.1 | Thale cress | cytosol | 80.72 | 69.07 |
| GSMUA_Achr7P03750_001 | Banana | cytosol | 72.29 | 68.97 |
| Bra009944.1-P | Field mustard | cytosol | 79.52 | 68.75 |
| CDX86141 | Canola | cytosol | 79.52 | 68.75 |
| VIT_14s0060g02300.t01 | Wine grape | plastid | 74.7 | 68.13 |
| CDX80621 | Canola | cytosol | 78.31 | 67.71 |
| CDY25023 | Canola | cytosol | 78.31 | 67.71 |
| Bra020576.1-P | Field mustard | cytosol | 77.11 | 66.67 |
| CDY05562 | Canola | cytosol | 77.11 | 66.67 |
| AT5G27760.1 | Thale cress | cytosol | 75.9 | 65.62 |
| Zm00001d050935_P001 | Maize | cytosol | 77.11 | 64.65 |
| GSMUA_Achr3P24030_001 | Banana | cytosol | 75.9 | 64.29 |
| GSMUA_Achr8P22530_001 | Banana | cytosol | 77.11 | 63.37 |
| TraesCS2B01G460200.1 | Wheat | cytosol | 73.49 | 61.62 |
| TraesCS2D01G438000.1 | Wheat | cytosol | 73.49 | 61.62 |
| TraesCS2A01G440800.1 | Wheat | cytosol, mitochondrion, plastid | 72.29 | 60.61 |
| Os02t0592400-01 | Rice | cytosol | 74.7 | 57.94 |
| Zm00001d017060_P001 | Maize | cytosol | 75.9 | 56.76 |
| EES05347 | Sorghum | cytosol | 73.49 | 55.96 |
| HORVU7Hr1G087030.1 | Barley | extracellular | 38.55 | 54.24 |
| KRH73222 | Soybean | mitochondrion, plastid | 46.99 | 53.42 |
| HORVU2Hr1G102130.5 | Barley | cytosol | 55.42 | 38.33 |
| KRH31217 | Soybean | plastid | 40.96 | 34.0 |
| KRG97658 | Soybean | plastid | 39.76 | 33.0 |
Protein Annotations
| EntrezGene:100789542 | MapMan:35.2 | EMBL:ACUP02012770 | EMBL:BT098697 | UniProt:C6TLV3 | EnsemblPlantsGene:GLYMA_20G236900 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031305 | GO:GO:0033617 |
| GO:GO:0097249 | InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | EnsemblPlants:KRG92905 | ProteinID:KRG92905 | ProteinID:KRG92905.1 |
| PFAM:PF04588 | PFscan:PS51503 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF1 | TMHMM:TMhelix | UniParc:UPI0001B17103 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr20:+:46901691..46904346
Molecular Weight (calculated)
9155.2 Da
IEP (calculated)
10.594
GRAVY (calculated)
-0.082
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MSEAKTQIES IRKWVVEHKL RTVGCLWLSG ITGSIAYNWS RPNMKTSVKI IHARLHAQAL TLGALAGAAL VEYYDRKTGA KAS
1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD
Arabidopsis Description
F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.