CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 4
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27760.1	KRG91803	AT1G35670.1	19130088
AT5G27760.1	KRH34983	AT1G35670.1	19130088
AT5G27760.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g050870.2.1	Tomato	plastid	65.75	64.86
VIT_13s0067g02300.t01	Wine grape	plastid	68.49	63.29
KRH31217	Soybean	plastid	78.08	57.0
KRG97658	Soybean	plastid	73.97	54.0
KRG92905	Soybean	cytosol	53.42	46.99
PGSC0003DMT400071904	Potato	cytosol	50.68	46.25
GSMUA_AchrUn_...	Banana	plastid	56.16	46.07
GSMUA_Achr5P29560_001	Banana	plastid	54.79	45.45
CDX80621	Canola	cytosol	56.16	42.71
AT5G27760.1	Thale cress	cytosol	54.79	41.67
CDY25023	Canola	cytosol	54.79	41.67
CDY05562	Canola	cytosol	54.79	41.67
CDX86141	Canola	cytosol	54.79	41.67
Bra020576.1-P	Field mustard	cytosol	54.79	41.67
Bra009944.1-P	Field mustard	cytosol	54.79	41.67
AT3G05550.1	Thale cress	cytosol	54.79	41.24
Zm00001d052333_P001	Maize	cytosol	58.9	39.45
Os12t0111600-01	Rice	nucleus	56.16	39.05
Os11t0112000-01	Rice	mitochondrion	47.95	38.89
KRH33884	Soybean	cytosol	35.62	37.68
EES09115	Sorghum	nucleus, plastid	56.16	37.61
Zm00001d036839_P001	Maize	cytosol, nucleus, plastid	54.79	35.71
HORVU5Hr1G047000.1	Barley	cytosol, plastid	36.99	28.12
TraesCS5B01G147500.1	Wheat	cytosol	36.99	28.12
TraesCS5A01G148900.1	Wheat	cytosol	35.62	27.08
TraesCS5D01G143900.1	Wheat	cytosol	35.62	27.08

Protein Annotations

MapMan:35.2	EMBL:ACUP02001272	EMBL:BT092730	UniProt:C6T5L8	EnsemblPlantsGene:GLYMA_02G259700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031305	GO:GO:0033617	GO:GO:0097249
InterPro:Hypoxia_induced_domain	InterPro:IPR007667	EnsemblPlants:KRH73222	ProteinID:KRH73222	ProteinID:KRH73222.1	PFAM:PF04588
PFscan:PS51503	PANTHER:PTHR28018	PANTHER:PTHR28018:SF3	TMHMM:TMhelix	UniParc:UPI0001B15E3B	:

Description

hypothetical protein

Coordinates

chr2:+:44658495..44659805

Molecular Weight (calculated)

7952.7 Da

IEP (calculated)

10.817

GRAVY (calculated)

0.086

Length

73 amino acids

Sequence
(BLAST)

1: MDAIQLWVSK HKLATVGGLW ASGIGASLVA YSRTRSPMKP SLRLIHARLH AQALTLAVLS GAAAYRYYEN RAD

Best Arabidopsis Sequence Match ( AT3G05550.1 )
(BLAST)

1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD

Arabidopsis Description

F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.