Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | plastid | 76.14 | 75.28 |
| Solyc06g050870.2.1 | Tomato | plastid | 53.41 | 63.51 |
| VIT_13s0067g02300.t01 | Wine grape | plastid | 56.82 | 63.29 |
| KRH73222 | Soybean | mitochondrion, plastid | 45.45 | 54.79 |
| PGSC0003DMT400071904 | Potato | cytosol | 45.45 | 50.0 |
| KRH31217 | Soybean | plastid | 53.41 | 47.0 |
| KRG97658 | Soybean | plastid | 51.14 | 45.0 |
| Zm00001d052333_P001 | Maize | cytosol | 54.55 | 44.04 |
| EES09115 | Sorghum | nucleus, plastid | 54.55 | 44.04 |
| GSMUA_Achr7P03750_001 | Banana | cytosol | 40.91 | 41.38 |
| Os12t0111600-01 | Rice | nucleus | 47.73 | 40.0 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 48.86 | 38.39 |
| GSMUA_Achr3P24030_001 | Banana | cytosol | 42.05 | 37.76 |
| Os11t0112000-01 | Rice | mitochondrion | 37.5 | 36.67 |
| CDX80621 | Canola | cytosol | 38.64 | 35.42 |
| AT5G27760.1 | Thale cress | cytosol | 37.5 | 34.38 |
| CDY25023 | Canola | cytosol | 37.5 | 34.38 |
| CDX86141 | Canola | cytosol | 37.5 | 34.38 |
| Bra009944.1-P | Field mustard | cytosol | 37.5 | 34.38 |
| GSMUA_Achr8P22530_001 | Banana | cytosol | 38.64 | 33.66 |
| CDY05562 | Canola | cytosol | 36.36 | 33.33 |
| Bra020576.1-P | Field mustard | cytosol | 36.36 | 33.33 |
| AT3G05550.1 | Thale cress | cytosol | 36.36 | 32.99 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 29.55 | 27.08 |
| TraesCS5B01G147500.1 | Wheat | cytosol | 29.55 | 27.08 |
| TraesCS5D01G143900.1 | Wheat | cytosol | 28.41 | 26.04 |
| TraesCS5A01G148900.1 | Wheat | cytosol | 27.27 | 25.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P29560_001 | EnsemblPlants:GSMUA_Achr5T29560_001 | EnsemblPlantsGene:GSMUA_Achr5G29560_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF3 | PFAM:PF04588 | PFscan:PS51503 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000296C820 | UniProt:M0T2T0 | MapMan:35.2 | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G29560_001]
Coordinates
chr5:+:29220687..29221583
Molecular Weight (calculated)
9384.3 Da
IEP (calculated)
9.768
GRAVY (calculated)
0.125
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MNSLKSWVAE HKLTSIGAVW ASALGSSLAL ALKRSPTTKT SLRLIHARMH AQALTLAVLS SAALLHYYDT DGKIAMDDGE NVTPHSLA
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD
Arabidopsis Description
Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.