Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g050870.2.1 | Tomato | plastid | 70.0 | 75.68 |
| VIT_13s0067g02300.t01 | Wine grape | plastid | 58.75 | 59.49 |
| KRH73222 | Soybean | mitochondrion, plastid | 46.25 | 50.68 |
| GSMUA_AchrUn_... | Banana | plastid | 51.25 | 46.07 |
| GSMUA_Achr5P29560_001 | Banana | plastid | 50.0 | 45.45 |
| Os11t0112000-01 | Rice | mitochondrion | 46.25 | 41.11 |
| KRH31217 | Soybean | plastid | 47.5 | 38.0 |
| EES09115 | Sorghum | nucleus, plastid | 51.25 | 37.61 |
| KRG97658 | Soybean | plastid | 46.25 | 37.0 |
| Os12t0111600-01 | Rice | nucleus | 47.5 | 36.19 |
| Zm00001d052333_P001 | Maize | cytosol | 48.75 | 35.78 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 46.25 | 33.04 |
| PGSC0003DMT400029479 | Potato | cytosol | 37.5 | 30.93 |
| PGSC0003DMT400063585 | Potato | cytosol | 36.25 | 29.0 |
| TraesCS5B01G147500.1 | Wheat | cytosol | 25.0 | 20.83 |
| TraesCS5D01G143900.1 | Wheat | cytosol | 25.0 | 20.83 |
| TraesCS5A01G148900.1 | Wheat | cytosol | 23.75 | 19.79 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 23.75 | 19.79 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400071904 | EnsemblPlantsGene:PGSC0003DMG400027976 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Hypoxia_induced_domain |
| InterPro:IPR007667 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF3 | PFAM:PF04588 | PFscan:PS51503 | PGSC:PGSC0003DMG400027976 |
| UniParc:UPI000294A2AF | UniProt:M1CPG8 | MapMan:35.2 | : | : | : |
Description
Hypoxia induced protein conserved region containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027976]
Coordinates
chr6:-:31172331..31173218
Molecular Weight (calculated)
8713.5 Da
IEP (calculated)
7.729
GRAVY (calculated)
-0.125
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MEMDELEIKP PASLVDTICE KQGTVWATAV GASLAHSRAT TPLKPSLRLI HARMHAQALT LAVLSGAAVY HYYDKNSNHN
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD
Arabidopsis Description
Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.