Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- peroxisome 1
- extracellular 1
- mitochondrion 2
- plasma membrane 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | PGSC0003DMT400002331 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | PGSC0003DMT400067082 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g099820.2.1 | Tomato | cytosol | 94.0 | 94.0 |
| Bra020576.1-P | Field mustard | cytosol | 68.0 | 70.83 |
| CDY05562 | Canola | cytosol | 68.0 | 70.83 |
| CDY25023 | Canola | cytosol | 67.0 | 69.79 |
| Bra009944.1-P | Field mustard | cytosol | 66.0 | 68.75 |
| CDX80621 | Canola | cytosol | 66.0 | 68.75 |
| CDX86141 | Canola | cytosol | 66.0 | 68.75 |
| AT3G05550.1 | Thale cress | cytosol | 66.0 | 68.04 |
| AT5G27760.1 | Thale cress | cytosol | 64.0 | 66.67 |
| PGSC0003DMT400029479 | Potato | cytosol | 60.0 | 61.86 |
| PGSC0003DMT400071904 | Potato | cytosol | 29.0 | 36.25 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400063585 | EnsemblPlantsGene:PGSC0003DMG400024718 | EntrezGene:102582605 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF1 | PFAM:PF04588 | PFscan:PS51503 |
| PGSC:PGSC0003DMG400024718 | RefSeq:XP_006344685.1 | SEG:seg | UniParc:UPI000294F64C | UniProt:M1CAU5 | MapMan:35.2 |
Description
Hypoxia-responsive family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024718]
Coordinates
chr1:+:77554157..77555141
Molecular Weight (calculated)
11226.4 Da
IEP (calculated)
10.663
GRAVY (calculated)
-0.426
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MEASNKKTTF ESAREWISDH KLRTVGSLWL SGIVGSVAYN WSKPSMKTSV RLIHARLHAQ ALTLAALAGA AAVEYYDHKT NNNAQRYPKF INMNSFAQKK
1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD
Arabidopsis Description
F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.