Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92905 | Soybean | cytosol | 69.07 | 80.72 |
| AT5G27760.1 | Thale cress | cytosol | 77.32 | 78.12 |
| GSMUA_Achr7P03750_001 | Banana | cytosol | 63.92 | 71.26 |
| VIT_05s0077g02320.t01 | Wine grape | cytosol | 71.13 | 71.13 |
| PGSC0003DMT400063585 | Potato | cytosol | 68.04 | 66.0 |
| GSMUA_Achr8P22530_001 | Banana | cytosol | 68.04 | 65.35 |
| KRH33884 | Soybean | cytosol | 46.39 | 65.22 |
| Solyc01g099820.2.1 | Tomato | cytosol | 67.01 | 65.0 |
| GSMUA_Achr3P24030_001 | Banana | cytosol | 64.95 | 64.29 |
| Zm00001d050935_P001 | Maize | cytosol | 60.82 | 59.6 |
| TraesCS2D01G438000.1 | Wheat | cytosol | 58.76 | 57.58 |
| TraesCS2A01G440800.1 | Wheat | cytosol, mitochondrion, plastid | 57.73 | 56.57 |
| Os02t0592400-01 | Rice | cytosol | 61.86 | 56.07 |
| TraesCS2B01G460200.1 | Wheat | cytosol | 56.7 | 55.56 |
| KRH73222 | Soybean | mitochondrion, plastid | 41.24 | 54.79 |
| EES05347 | Sorghum | cytosol | 60.82 | 54.13 |
| Zm00001d017060_P001 | Maize | cytosol | 59.79 | 52.25 |
| HORVU7Hr1G087030.1 | Barley | extracellular | 30.93 | 50.85 |
| GSMUA_AchrUn_... | Banana | plastid | 39.18 | 42.7 |
| KRH31217 | Soybean | plastid | 39.18 | 38.0 |
| KRG97658 | Soybean | plastid | 38.14 | 37.0 |
| HORVU2Hr1G102130.5 | Barley | cytosol | 45.36 | 36.67 |
| GSMUA_Achr5P29560_001 | Banana | plastid | 32.99 | 36.36 |
| Os11t0112000-01 | Rice | mitochondrion | 28.87 | 31.11 |
| Os12t0111600-01 | Rice | nucleus | 32.99 | 30.48 |
| EES09115 | Sorghum | nucleus, plastid | 32.99 | 29.36 |
| Zm00001d052333_P001 | Maize | cytosol | 32.99 | 29.36 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 30.93 | 26.79 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 24.74 | 25.0 |
| TraesCS5B01G147500.1 | Wheat | cytosol | 24.74 | 25.0 |
| TraesCS5A01G148900.1 | Wheat | cytosol | 23.71 | 23.96 |
| TraesCS5D01G143900.1 | Wheat | cytosol | 22.68 | 22.92 |
Protein Annotations
| MapMan:35.2 | EntrezGene:819721 | UniProt:A0A178VM78 | ProteinID:AAF26142.1 | ProteinID:AEE74257.1 | ArrayExpress:AT3G05550 |
| EnsemblPlantsGene:AT3G05550 | RefSeq:AT3G05550 | TAIR:AT3G05550 | RefSeq:AT3G05550-TAIR-G | EnsemblPlants:AT3G05550.1 | TAIR:AT3G05550.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031305 | GO:GO:0033617 |
| GO:GO:0097249 | InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | RefSeq:NP_187206.1 | ProteinID:OAP06365.1 | PFAM:PF04588 |
| PO:PO:0000293 | PFscan:PS51503 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF2 | UniProt:Q9M9W0 | UniParc:UPI00000AA71C |
| SEG:seg | : | : | : | : | : |
Description
F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
Coordinates
chr3:+:1612690..1614027
Molecular Weight (calculated)
10967.2 Da
IEP (calculated)
9.787
GRAVY (calculated)
-0.319
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.